Volume 9 Supplement 1

Seventeenth Annual Computational Neuroscience Meeting: CNS*2008

Open Access

What you show is what you get: sampling biases in determining biological sensory function

BMC Neuroscience20089(Suppl 1):P121


Published: 11 July 2008


Classical studies of biological sensory systems use the following main technique: sensory stimuli are drawn from a pre-determined distribution P(stim) and presented to the animal; the ensemble associated with sensory response is collected and used to characterize the conditional distribution P(stim|resp) (or parameters thereof) as a model of sensory system function. However, most of the standard statistical tool used in neuroscience to estimate P(stim|resp) are valid under a very fundamental condition – that the samples used to estimate P(stim|resp) are drawn from the same distribution. This is obviously not the case in most studies of sensory system, where the samples are drawn explicitly from a different distribution, P(stim) (the sampling distribution), selected by the scientist. We demonstrate here that in this case the observed conditional distribution is P*(stim|resp) = P(stim|resp)*P(stim) and expectations estimated with this dataset are parameters of P*, not P. To characterize the actual functional properties of the system, one needs to use estimators developed within unequal probability sampling theory [1]. We apply one of these estimators, the Horvitz-Thompson estimator of the mean mHT = Σi xi/P(xi), to observations {xi} from the cricket cercal sensory system and illustrate the ensuing changes in apparent functionality (Figure 1).
Figure 1

The spike-triggered average (STA) of air current stimulis sampled from a band-limited GWN distribution (5–500 Hz) is shown in blue. The corresponding Horvitz-Thompson estimate of the STA is plotted in green.

Authors’ Affiliations

Center for Computational Biology, Montana State University


  1. Thomson SK: Sampling. 2002, New York: Wiley Interscience, 2Google Scholar


© Dimitrov; licensee BioMed Central Ltd. 2008

This article is published under license to BioMed Central Ltd.