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A continuum approach to model neurites/dendrites with emerging subtrees
BMC Neuroscience volume 14, Article number: P73 (2013)
Neuronal morphology plays an important role in the processing of spatiotemporal synaptic input patterns.
We formulate a new cable theoretic model to study the output in a dendritic cable with many subtrees, both analytically and computationally. The model is an extension of the continuum spine model derived by Baer and Rinzel  and like that model, there is no direct interaction between branches. Instead, all interactions occur through the primary dendrite. The continuum branch formulation provides a link between analytical and computational approaches and allows for detailed models of structural plasticity with the advantage that parameters like branch density can be varied dynamically. This is in contrast to multicompartment modeling approaches where different models, each having a static morphology, must be used.
A multicompartment model with equally spaced discrete branches implemented in NEURON  is used to validate the continuum branch model. Then we demonstrate the approach using Drosophila Motoneuron 5 (MN5), a monopolar neuron, where soma and axon are connected via a long primary neurite from which dendritic subtrees emerge. Parameters for the model are based on 3D reconstructions  of that neuron and the subtrees are reduced to uniform cables.
For a passive membrane and uniformly distributed branches, this formulation provides analytic estimates of electrical parameters, such as the input resistance. Transforming the equations to the frequency domain, we examine the steady state response properties for periodic forcing, where the impact of structural properties on transfer properties and the phase shift at different locations are calculated directly. Based on calculations of the voltage response along the primary neurite, the continuum formulation performs much better than a simple cable as an approximation of the morphologically realistic model. Simulations of the continuum model are in good agreement with the realistic model for frequencies up to 1000 Hz.
In insects neurons the spike initiation zone (SIZ) is usually located far away from the recording site. We use this model to investigate the impact of the location of the SIZ and morphology on spike initiation and spike shape at the recording site as well as on activation and inactivation curves of ion channels obtained by voltage clamp recordings.
Also we investigate how structural properties impact the results found in a point model of MN5, where variations of ion channel densities in physiological ranges lead to different observed firing properties .
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Herrera-Valdez M, McKiernan E, Berger S, Ryglewski S, Duch C, Crook S: Relating ion channel expression, bifurcation structure, and diverse firing patterns in a model of an identified motor neuron. J Comput Neurosci. 2012, 1-19.
We gratefully acknowledge the support of the National Science Foundation through the CRCNS program (IIS 0613404).
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Berger, S.D., Baer, S.M. & Crook, S.M. A continuum approach to model neurites/dendrites with emerging subtrees. BMC Neurosci 14, P73 (2013) doi:10.1186/1471-2202-14-S1-P73
- Recording Site
- Steady State Response
- Continuum Spine
- Voltage Clamp Recording
- Multicompartment Model