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- Open Access
A computational study of stochastic mechanisms in dendritic calcium spike generation
BMC Neurosciencevolume 13, Article number: P152 (2012)
Neuronal activity is largely influenced by voltage-dependent and calcium-dependent ion channels, and their interaction with calcium related mechanisms present in and around the complex cellular morphology. In the past, people have focused on stochasticity of voltage-gated ion channels to study its effect on neuronal excitability [1–4] but have ignored the intracellular aspects, in particular calcium dynamics. It is our aim to clarify the role of stochasticity of intracellular calcium dynamics in modulating neuronal output. Intracellular calcium dynamics in neuronal systems significantly control their firing pattern, such as a calcium spike. A calcium spike is generated by interaction of voltage gated Ca2+ channels and Ca2+-activated K+ channels, where the interaction is mediated through intracellular calcium mechanisms. A significant proportion of calcium entering through voltage-gated calcium channels binds to buffers, diffuses away and is extruded. Only a limited amount of calcium binds to Ca2+-activated K+ channels to conform it to conducting states. These complex interactions take place in and around complex cellular morphology, where stochastic interaction between diffusing molecules and surface bound molecules, stochastic transitions between ion channel conformations and variability in molecular arrangement may have a significant effect on neuronal excitability.
We studied the stochastic behavior of dendritic calcium spikes in Purkinje neurons. In our study, we used a model for dendritic calcium spikes, which included P- and T- type Ca2+ channels, BK- and SK- type Ca2+-activated K+ channels, parvalbumin and calbindin as calcium buffers, pumps, diffusion of Ca2+ molecules, diffusion of free buffers and diffusion of Ca2+ bound buffers. Details about the ion channel kinetics, buffer kinetics and diffusion rate constants used in this study can be found in Anwar et al. 2010  .We ran all simulations in STEPS , which supports stochastic and deterministic molecular simulations alongside accurate computation of the electrical behavior of the cellular region, all within complex 3D morphologies. Therefore we could run a series of stochastic, deterministic and hybrid simulations, investigate the different sources of noise individually and together, and compare to deterministic solutions.
By comparing the sources of noise in this system in absolute and relative terms at different lengths of dendritic section we demonstrate the significance of the different contributing factors to stochasticity in the system, including calcium dynamics and ion channel gating, on a variety of spatial scales.
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STEPS: STochastic Engine for Pathway Simulation. [http://steps.sourceforge.net/]