Volume 13 Supplement 1
Modeling realistic extracellular spiking activity in populations of neurons for the purpose of evaluating automatic spike-sorting algorithms
© Hagen et al; licensee BioMed Central Ltd. 2012
Published: 16 July 2012
The emergence of silicon-based extracellular recording devices with large numbers of electrode contacts, such as multi-shank laminar electrodes or high-density multi-electrode arrays (MEA) now makes it possible to potentially record spiking activity from thousands of neurons simultaneously. With the concomitant increase in amounts and complexity of data, manual spike sorting is no longer an option, and there is a dire need for automatic spike-sorting methods. These methods must be able to correctly and efficiently resolve spikes of individual neurons from the recorded mixture, as discussed in a recent review .
Test data for arbitrary electrode geometries, model neurons, noise levels and synchronicity levels can be produced at wish. Here we present example results relevant for tetrode and polytrode recordings in cortex and hippocampus. We also present test data for situations where prominent electrical boundary-condition effects significantly modify the recorded potentials, and FEM modeling must be used to solve the electrostatic problem. This is of particular relevance for cell cultures or retinal slices placed on high density MEAs.
An algorithm evaluation website has been set up on http://www.g-node.org/spike to facilitate use of such benchmark data to evaluate the performance of spike sorting algorithms, as outlined in Figure 1B.
This work is supported through the Norwegian Research Council (NevroNor, eScience, Notur) and INCF through its German Node.
- Einevoll GT, Franke F, Hagen E, Pouzat C, Harris KD: Towards reliable spike-train recordings from thousands of neurons with multielectrodes. Curr Opin Neurobiol. 2011, 22: 1-7.Google Scholar
- Holt GR, Koch C: Electrical interactions via the extracellular potential near cell bodies. J Comp Neurosci. 1999, 6: 169-184. 10.1023/A:1008832702585.View ArticleGoogle Scholar
- Hines ML, Davison AP, Muller E: Neuron and Python. Front Neuroinformatics. 2009, 3: 1-12.PubMed CentralView ArticleGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.