Table 2 Enriched biological process GO terms identified for day 6 blue versus dark downregulated genes

GO:0009886

Post-embryonic animal morphogenesis

app, ewg, mirr, ara, oc, so, dlg1, sd, Cbl, jumu, CG30456, psq, RhoGEF2, Exn, mthl1, CG33275, zfh2, CG13366

GO:0009653

Anatomical structure morphogenesis

app, kek4, ewg, oc, vri, dlg1, dnt, ric8a, Cbl, jumu, csw, RhoGEF2, Prosap, mthl1, Moe, CG13366, zfh2, Hr39, slik, CHES-1-like, Shroom, fru, mirr, CG13188, caup, ara, so, gl, sd, psq, CG30456, Crg-1, fred, pyd, Exn, CG33275

GO:0042693

Muscle cell fate commitment

caup, ara

GO:0006357

Regulation of transcription by RNA polymerase II

CHES-1-like, mirr, ewg, Mef2, fru, caup, ara, oc, dlg1, gl, so, sd, onecut, psq, Eip74EF, Crg-1, NfI, csw, jing, tim, jigr1, Camta, Hr39, Elp3

GO:0006355

Regulation of transcription, DNA-templated

CTCF, ewg, Kdm4B, tinc, oc, vri, dlg1, jumu, onecut, Eip74EF, csw, NfI, tim, zfh2, Hr39, Elp3, Pdp1, CHES-1-like, fru, Mef2, mirr, CG13188, caup, ara, Hmt4-20, Hmx, gl, so, sd, psq, Crg-1, jing, jigr1, Camta, wts, thoc5

GO:0030001

Metal ion transport

eag, Hk, Ca-alpha1D, Ndae1, Ca-beta, Sh, SK, trp, olf186-F, slo

GO:0042391

Regulation of membrane potential

eag, inaF-D, Ca-alpha1D, Prosap, Sh, inaF-C, SK, Slob, Moe, slo

GO:0007619

Courtship behavior

eag, rut, Sh, gb

GO:0048150

Behavioral response to ether

eag, Sh

GO:0007617

Mating behavior

eag, tim, rut, fru, Sh, gb, dlg1, Moe, Hr39, slo

GO:0007275

Multicellular organism development

ewg, fru, Mef2, mirr, CG2681, oc, vri, dlg1, dnt, cdi, Elp3, Pdp1, Sema-1b

GO:0046154

Rhodopsin metabolic process

fdl, rdgA, alpha-Man-IIb, trp, Hexo1

GO:0001745

Compound eye morphogenesis

fred, mirr, caup, ara, pyd, oc, so, gl, sd

GO:0008049

Male courtship behavior

fru, gb, dlg1, Moe, Hr39, slo

GO:0045433

Male courtship behavior, veined wing generated song production

fru, Moe, Hr39, slo

GO:0045938

Positive regulation of circadian sleep/wake cycle, sleep

Hk, homer, Sh, mld

GO:0045187

Regulation of circadian sleep/wake cycle, sleep

Hk, tim, homer, mld, Sh

GO:0042752

Regulation of circadian rhythm

Hk, tim, homer, mld, Sh, CG33275, gl, so

GO:0007623

Circadian rhythm

Hk, tim, Mef2, dlg1, vri, so, gl, Pdp1, slo

GO:0016057

Regulation of membrane potential in photoreceptor cell

inaF-D, SK, Moe

GO:1902680

Positive regulation of RNA biosynthetic process

Mef2, mirr, caup, ara, oc, gl, so, sd, jumu, onecut, Eip74EF, NfI, jing, Camta, thoc5, Hr39, Pdp1

GO:0035120

Post-embryonic appendage morphogenesis

mirr, ara, Exn, mthl1, CG33275, sd, zfh2,, Cbl, jumu, CG30456, psq

GO:0045317

Equator specification

mirr, caup, ara

GO:0009887

Animal organ morphogenesis

mirr, ewg, CG13188, caup, ara, oc, gl, so, vri, sd, dnt, fred, pyd, Prosap, mthl1, CG13366, Hr39

GO:0045935

Positive regulation of nucleobase-containing compound metabolic process

mirr, Mef2, caup, ara, oc, gl, so, sd, jumu, tankyrase, onecut, Eip74EF, NfI, jing, Camta, thoc5, Hr39, Pdp1

GO:0007635

Chemosensory behavior

mura, smi35A, gish, rut, Sh, gb, nord, Moe, trp, psq

GO:0007610

Behavior

nord, oc, dlg1, vri, hppy, CG13192, eag, smi35A, gish, tim, Sh, Prosap, mld, Moe, Elp3, Hr39, Hk, Mef2, fru, gb, trp, psq, slo, mura, t, homer, rut

GO:0035025

Positive regulation of Rho protein signal transduction

RhoGEF2, Exn, CG33275, CG30456

GO:0009314

Response to radiation

smi35A, tim, CG30118, rdgA, CG9236, Sh, Camta, dlg1, wts, gl, Hdc, trp

GO:0009416

Response to light stimulus

smi35A, tim, rdgA, CG30118, CG9236, Sh, Camta, dlg1, gl, Hdc, trp