Kalirin12 interacts with dynamin
© Xin et al; licensee BioMed Central Ltd. 2009
Received: 23 December 2008
Accepted: 17 June 2009
Published: 17 June 2009
Guanine nucleotide exchange factors (GEFs) and their target Rho GTPases regulate cytoskeletal changes and membrane trafficking. Dynamin, a large force-generating GTPase, plays an essential role in membrane tubulation and fission in cells. Kalirin12, a neuronal RhoGEF, is found in growth cones early in development and in dendritic spines later in development.
The IgFn domain of Kalirin12, not present in other Kalirin isoforms, binds dynamin1 and dynamin2. An inactivating mutation in the GTPase domain of dynamin diminishes this interaction and the isolated GTPase domain of dynamin retains the ability to bind Kalirin12. Co-immunoprecipitation demonstrates an interaction of Kalirin12 and dynamin2 in embryonic brain. Purified recombinant Kalirin-IgFn domain inhibits the ability of purified rat brain dynamin to oligomerize in response to the presence of liposomes containing phosphatidylinositol-4,5-bisphosphate. Consistent with this, expression of exogenous Kalirin12 or its IgFn domain in PC12 cells disrupts clathrin-mediated transferrin endocytosis. Similarly, expression of exogenous Kalirin12 disrupts transferrin endocytosis in cortical neurons. Expression of Kalirin7, a shorter isoform which lacks the IgFn domain, was previously shown to inhibit clathrin-mediated endocytosis; the GTPase domain of dynamin does not interact with Kalirin7.
Kalirin12 may play a role in coordinating Rho GTPase-mediated changes in the actin cytoskeleton with dynamin-mediated changes in membrane trafficking.
Features unique to Kalirin12 include tandem Ig and Fn domains as well as a putative kinase domain (Fig. 1A). While the Drosophila TRIO gene encodes neither an Ig nor a Fn domain, C. elegans UNC73, the paralog of Kalirin and Trio, encodes tandem IgFn domains and mammalian TRIO genes encode a single Ig domain . Both extracellular and intracellular IgFn domains are involved in protein-protein interactions [11, 12]. To gain insight into roles unique to Kalirin12, we searched for proteins that interacted with its IgFn domain, and identified the GTPase domain of dynamin.
Dynamin, a GTPase that causes membrane tubulation and fission, plays an essential role in both exocytosis and endocytosis [13, 14]. Self-assembly increases the GTPase activity of dynamin [15–17], as does the binding of dynamin to PIP2-containing lipid tubules . Dynamin interacts with several SH3 domain proteins through its C-terminal proline-rich domain (PRD) and with itself via the interaction of its GTPase domain with its assembly or GTPase effector (GED) domain  (Fig. 1C). In developing neurons, both exocytosis and endocytosis are critical players in the deployment and retraction of membrane, and must be coordinated with the assembly and disassembly of filamentous actin and microtubules in order to promote directed neuronal growth [19–21]. In mature neurons, dendritic spines must coordinate exocytosis and endocytosis to respond rapidly to incoming stimuli with changes in shape and altered deployment of receptors [22, 23].
Rho GEFs of the Trio/Kalirin family, with their ability to activate Rac and RhoG, participate in the membrane remodeling associated with growth cone extension and active dendritic spines [6, 24–29]. UNC-73 regulates the subcellular localization of UNC-40, a Deleted in Colorectal Cancer (DCC) receptor homolog, to direct growth cone migration . Trio8, a splice variant which lacks the C-terminal GEF2, Ig and kinase domains , modulates endosome dynamics and neurite elongation in Purkinje neurons . In AtT-20 cells, both Kalirin and Trio affect secretion via the regulated pathway [29, 31]. Expression of exogenous Kalirin7 in non-neuronal cells inhibits the uptake of transferrin . This response requires the presence of the Sec14p domain, which binds phosphatidylinositol-(3,5)-bisphosphate and phosphatidylinositol-(3)-phosphate, and the spectrin-like repeats, which allow Kalirin to oligomerize.
Fragments of rat Kalirin were cloned into the pEAK10 vector (Edge Biosystems, Gaithersburg, MD) with a His6-myc epitope tag at the NH2-terminus . Enhanced green fluorescent protein (from pEGFP-N2; Clontech, Mountain View, CA) replaced residues L1127STHTS1132 of Kalirin12 in the pEAK GFP-Kalirin12 vector . The IgFn region of Kalirin (L2456LG ... GIS2625) was inserted into the pEGFP-N2 vector to make a GFP-IgFn fusion protein, and into pGEX-6P (Amersham Biosciences) to generate GST-IgFn. pEGFP-N1 vectors encoding GFP fused to the C-terminus of human dynamin2, dynamin2/K44A, dynamin2/ΔPRD (lacking the Pro-rich domain, P747 to D870), and dynamin2 GED/PRD (containing both the GED and Pro-rich domains, S618 to D870) were the kind gifts of Dr. Pietro De Camilli (Yale University) [17, 34, 35]. A vector encoding GFP fused to the C-terminus of the GTPase domain of human dynamin2 (M1 GN...RPD320) was generated by subcloning a PCR amplified fragment flanked by HindIII and EcoR 1 sites into pEGFP-N2. All constructs were verified by DNA sequencing.
GST fusion protein expression and purification
Bacteria (E. coli BL21/λDE3) were transformed with vectors encoding pGEX.GST-IgFn or GST-Amphiphysin2 SH3 (a gift from Dr. Pietro De Camilli, Yale University), grown to stationary phase in LB medium containing ampicillin, diluted 100-fold and grown to OD600 = 1.3 at 37C, induced with 0.4 mM IPTG and grown at 16C overnight. Pellets of cells were resuspended in PBS (50 mM NaH2PO4, pH 7.4, 150 mM NaCl, 1 mM dithiothreitol, 5 mM EDTA, 1 mM PMSF) and passed 3 times through a French Press. Supernatants from a 500 ml culture were tumbled with 0.5 ml glutathione-Sepharose at 4C for 4 h. Beads were washed twice with 10 vol PBS, and once with 10 vol PBS containing 0.1% Triton X-100. Fusion proteins remained on the beads (stored at -80C). To elute the fusion proteins from the beads, beads were equilibrated with 10 vol of 50 mM Tris·HCl, pH 7.4, 150 mM NaCl, 1 mM DTT and eluted with 0.5 ml 50 mM Tris·HCl, pH 7.4, 150 mM NaCl, 1 mM DTT, 20 mM reduced glutathione. Fractions were dialyzed into 20 mM Hepes, pH 7.4, 100 mM NaCl, 1 mM DTT, 50% glycerol at 4C.
GST-IgFn binding assay
Freshly dissected female adult rat cortex was minced and homogenized in 0.32 M sucrose, 10 mM Tris·HCl, pH 7.0 (10% w/v) using a Potter-Elvehjem homogenizer and nuclei were removed by centrifugation at 138 × g for 5 min. The supernatant was centrifuged at 435,000 × g, 15 min; the resulting supernatant constituted the cytosolic fraction. The high speed pellet was resuspended in 20 mM Na TES, 10 mM mannitol, 1% TX-100, pH 7.4 (TMT) with protease inhibitors for 30 min, then centrifuged at 435,000 × g, 15 min. The detergent supernatant is the solubilized organellar fraction; the insoluble pellet was discarded. Samples were pre-cleared by incubation with GST-glutathione-Sepharose 4B beads for 1 h, 4C and supernatants were incubated with GST-IgFn-glutathione-Sepharose 4B beads for 1 h, 4C and washed. Bound proteins were eluted by boiling in 1× SDS loading buffer; aliquots were fractionated on 4–20% polyacrylamide gels. Proteins transferred to PVDF membranes were visualized with Coomassie Brilliant Blue R250 or Aurodye Forte (Amersham Biosciences, Piscataway, NJ). For mass spectroscopy, bands were excised from Coomassie stained gels and prepared for trypsin digestion at the UCHC Proteomics & Biological Mass Spectrometry facility (Dr. David Han, Director) . Five peptide sequences from rat dynamin1 were identified. Verification of mass spectroscopy results utilized antibodies that cross-react with all three dynamin gene products (pan-dynamin) (#610245, Pharmingen, San Diego, CA), or recognize individually dynamin1, 2, or 3 (#3456–3458, AbCam, Cambridge, UK).
pEAK Rapid cells were transiently transfected with vectors encoding EGFP or various fragments of dynamin. After 24 h, cells were extracted into 0.5 ml 20 mM NaTES, 10 mM mannitol, pH 7.4 (TM) containing protease inhibitor cocktail  and 0.2 mM Na4VO3. Following centrifugation (15,000 × g for 15 min), lysates were tumbled with GST or GST-IgFn beads, 4C, 2 h. After three rinses with TMT, proteins eluted by boiling in SDS sample buffer were separated by SDS-PAGE.
Rat cortical cytosolic fractions (as described above) and extracts of transfected pEAK Rapid cells were used for immunoprecipitations. pEAK Rapid cells extracted in TM were centrifuged at 435,000 × g for 1 h to remove particulates. Samples (100 μg protein for tissue extracts, or 1/3 of total sample for pEAK lysates) were incubated with antibodies to Kalirin (polyclonal antibody Kal-spectrin, Fig. 1A) , GFP (polyclonal antibody, Abcam), or dynamin (monoclonal antibody, BD Biosciences) for 2 h at 4C; immune complexes were isolated with Protein G or A Sepharose (Pharmacia Biotech, Uppsala, Sweden). Samples were fractionated on 4–20% polyacrylamide SDS gels and Western blot analysis was carried out with antibodies to Kalirin12, dynamin or GFP (clone N86/8, NeuroMAb, UC Davis, Davis, CA).
Primary cortical cultures and nucleofection
Cortices from E19.5 to P0 rats were diced and dissociated using a papain dissociation system (Worthington Biochemical Corporation, NJ). Plasmids (10 μg) were introduced into dissociated cells (107) by nucleofection using the Rat Neuron Nucleofector Kit, program O-003 (AMAXA GmbH, Germany). Nucleofected and control neurons (0.3 × 106/well) were plated onto poly-L-lysine coated glass coverslips and incubated in Neurobasal medium containing 10% fetal calf serum for 2 to 4 h; the medium was then changed to Neurobasal medium supplemented with 2% B27, 2% fetal calf serum, 0.5 mM L-glutamine, 25 μM L-glutamic acid, 100 U/ml penicillin and 0.1 mg/ml streptomycin (Invitrogen, Carlsbad, CA). After 4 days in vitro, 50% of the medium was replaced with fresh medium.
After 3 h in vitro, cortical neuron cultures were fixed with 4% formaldehyde in PBS, permeabilized and blocked . Primary antibodies were applied for 2 h and secondary antibodies for 1 h at room temperature; coverslips were mounted using Prolong Gold Antifade Reagent (Invitrogen). Images were captured using a Zeiss LSM510-Meta confocal microscope. Kalirin12 was detected using affinity-purified rabbit antibody JH3226 (1:100) ; Cy3-labeled donkey anti-rabbit IgG (1:1000, Jackson lab., PA) was used for co-staining with FITC-phalloidin (1:500, Sigma) while Alexa488-labeled donkey anti-rabbit IgG (1:500, Invitrogen) was used for co-staining with pan-dynamin monoclonal antibody (1:100, BD Biosciences) using Cy3-labeled donkey anti-mouse IgG (1:1000, Jackson Labs). Specificity of the Kalirin12 antibody was verified by pre-incubation (diluted 10-fold in blocking solution) with antigenic peptide (10 μg/ml) at 4C for 30 min; no signal was seen when the blocked antibody was applied to cortical neurons (6 DIV). βIII tubulin was detected with a chicken monoclonal antibody (1:2000; Aves Labs, Tigard, Oregon) followed by Alexa633-labeled goat anti-chicken IgG.
Endocytosis of transferrin
After 6 days in vitro, cortical neurons nucleofected with vector encoding Kalirin12 or EGFP were rinsed with serum-free DMEM for 5 min and incubated with 50 μg/ml AlexaFluor546-transferrin (T23364, Invitrogen) in serum-free DMEM for 5 min at 37C. Cells were quickly rinsed with serum-free DMEM and fixed with 4% formaldehyde (J.T. Baker, Phillipsburg, NJ) in PBS. Uptake of transferrin by PC12 cells was assessed in a similar manner. Removal of surface bound transferrin with a low pH wash (50 mM glycine, 100 mM NaCl, pH 5.0 for 10 min at 37C) did not change the answer. Kalirin12 positive neurons were identified using myc monoclonal antibody and FITC-tagged donkey anti-mouse IgG; neurons were identified by simultaneously visualizing βIII tubulin using chicken antibody (1:2000, Aves Labs) and Alexa633-goat-anti-chicken IgG (Invitrogen, CA). To quantify AlexaFluor546- transferrin uptake, images from EGFP or Kalirin12 positive neurons were acquired under identical conditions using a Zeiss LSM510 Meta confocal microscope. Once background fluorescence was defined, the cell soma was identified automatically using the 488 nm signal (myc or EGFP) and SimplePCI software (Compix, Inc., Sewickley, PA); total and mean red within the cell soma were measured for each transfected neuron. Significance was calculated using a two-tailed Student's T-test.
Dynamin self-assembly assay
Adult rat brains (1 g wet weight) were homogenized in 10 ml of buffer A (20 mM Hepes, pH 7.4, 150 mM NaCl, 1 mM MgCl2, 1 mM EGTA, 1 mM DTT, 0.3 mg/ml PMSF, protease inhibitor cocktail  with 10 mM NaF and 2 mM Na3VO4). Triton X-100 was added (1%) and the sample clarified by centrifugation at 100,000 × g for 10 min. Rat brain supernatant (10 ml; 8 mg protein/ml) was incubated with 0.5 ml GST-amphiphysin-2/SH3 domain  (8 mg) bound to glutathione Sepharose 4B equilibrated with buffer A. After tumbling for 4 h at 4C, beads were washed 3 times with 10 bed volumes buffer A. Proteins were eluted twice with 1 ml buffer B (20 mM Pipes, pH 6.5, 1.2 M NaCl, 1 mM DTT, protease/phosphatase inhibitors). Pooled eluates were dialyzed into buffer C (20 mM Hepes, pH 7.4, 100 mM NaCl, 1 mM DTT, 50% glycerol with protease/phosphatase inhibitors). Based on SDS-PAGE, the pooled eluate (2.0 ml) contained 0.1 mg/ml dynamin. Liposomes were prepared with 10% phosphatidylinositol-4,5-bisphosphate (#840046, Avanti, Alabaster, AL) and 90% brain polar extract (#141101, Avanti) [37, 38]. Organic solvent was removed using dry argon and a vacuum pump. The lipid film was re-hydrated with buffer G (40 mM Hepes, pH 7.4, 1 mM MgCl2, 5 mM KCl, 135 mM NaCl, 1 mM DTT with protease/phosphatase inhibitors) by vortexing continuously for 15 min. After three freeze/thaw cycles and repeated extrusion (21 times) through a 400 μm filter (#800282, Whatman, Clifton, NJ), the liposome suspension was centrifuged at 15,000 × g for 5 min; the supernatant, which contains liposomes ≤ 400 μm in diameter was used. The dynamin assembly assay was performed using purified dynamin pre-incubated or not with GST or GST-IgFn on ice for 1 h and incubated at room temperature for 10 min with or without fresh liposomes. Oligomerized dynamin was pelleted by centrifugation at 60,000 × g for 15 min. Supernatant and pellet fractions were recovered and equal aliquots were subjected to SDS-PAGE; dynamin in each fraction was determined by staining proteins transferred to PVDF membranes with Coomassie Brilliant Blue.
The IgFn domain of Kalirin12 interacts with Dynamin
Alternative splicing at the 3'-end of the Kalirin gene generates transcripts encoding Kalirin7 and 12 plus additional isoforms not diagramed (Fig. 1A) . Each longer Kalirin isoform contains additional domains and a unique C-terminus. The domains unique to the largest characterized isoform, Kalirin12, presumably contribute to its functions in the cell. To explore this possibility, a GST-IgFn fusion protein was purified, bound to glutathione Sepharose 4B, and incubated with cytosolic and solubilized organellar fractions prepared from adult rat cortex. Proteins that bound to GST-IgFn, but not to GST, and were not in the control fraction were of interest (Fig. 1B). A 100 kDa protein was the most prevalent band meeting these criteria and was subjected to trypsin digestion and mass spectrometry. Five dynamin peptides were identified, suggesting that dynamin might interact with Kalirin12 (Fig. 1C). Dynamins1, 2 and 3 share the domain structure illustrated in Fig. 1C; three of the peptides identified were unique to dynamin1, one was also present in dynamins2 and 3, and the fifth was common to dynamins1 and 3, but not dynamin2.
To determine which dynamins could be identified amongst the proteins bound to the IgFn domain of Kalirin12, binding was evaluated utilizing antibodies directed towards dynamins1, 2 and 3, each of which is expressed in the adult cortex (Fig. 1D). Both dynamin1 and dynamin2 were detected, although detection of dynamin2 required loading more of the bound fraction onto the gel. An interaction between the IgFn domain of Kalirin12 and dynamin3 was not detectable. As in the adult brain, all three isoforms of dynamin are expressed in embryonic day 18 brain and in post-natal day 1 cortex (Fig. 1E); all three isoforms of dynamin are also expressed in rat PC12 pheochromocytoma cells, one of the cell lines utilized for these studies. Kalirin12 expression declined with age, but was readily detected in adult rat cortex; PC12 cells were previously shown to express Kalirin12 . Although it was apparent that only a small percentage of the total dynamin interacted with the IgFn domain of Kalirin12 and these experiments do not establish a direct interaction, the interaction is specific.
Kalirin12 interacts with dynamin in vivo
We next wanted to determine whether endogenous Kalirin12 and dynamin interacted. Since Kalirin12 was enriched in embryonic brain, cytosolic fractions from rat embryonic cortex were analyzed. Immunoprecipitation with a Kalirin spectrin antibody and analysis with a pan-dynamin antibody demonstrated co-immunoprecipitation of dynamin (Fig. 2C, upper). Antisera specific for dynamin1 and dynamin2 were used to demonstrate co-immunoprecipitation of both dynamins with Kalirin (Fig. 2C, upper). The Kalirin spectrin antibody immunoprecipitates all of the major isoforms of Kalirin; to confirm the interaction of dynamin with Kalirin12, samples were immunoprecipitated with a pan-dynamin antibody and detected with a Kalirin12 specific antibody (Fig. 2C). Co-immunoprecipitation of dynamin and Kalirin12 was demonstrated.
We next compared the localization of Kalirin12 and dynamin in cortical neurons (Fig. 2D). When examined 3 h after plating, Kalirin12 positive puncta were prevalent in the soma (S) and growth cones (GC) of all cortical neurons. Pan-dynamin positive puncta were also apparent in the soma and in growth cones (Fig. 2D). Both proteins were present at multiple sites in these young neurons. Co-localization of a small fraction of the Kalirin12 and dynamin was observed in the cell soma and in growth cones (Fig. 2D, enlarged box regions). This result was consistent with the small fraction of the total dynamin or total Kalirin recovered by co-immunoprecipitation.
The IgFn domain of Kalirin binds to the GTPase domain of dynamin in a GTP-dependent manner
To determine whether the GTPase domain of dynamin bound to the IgFn domain of Kalirin, lysates containing dynamin2/GTPase domain were incubated with beads loaded with GST or GST-IgFn; binding of the isolated GTPase domain to the IgFn beads was readily detected (Fig. 3C). To explore further the effect of GTP on the interaction of dynamin with Kalirin-IgFn, GTP or GTPγS was added to lysates containing dynamin2/GFP before the GST-IgFn beads were added; both GTP and its non-hydrolyzable analog enhanced the interaction (Fig. 3D). In these crude lysates, addition of GTP could increase dynamin binding directly or indirectly, by affecting its oligomerization . Consistent with the ability of dynamins1 and 2 to interact with Kalirin-IgFn, their GTPase domains are almost 90% identical (P21575; P39052).
The ability of other fragments of dynamin to bind to GST-IgFn was evaluated to determine whether additional interactions could be detected. The proline rich domain (PRD) at the C-terminus of dynamin (Fig. 3A) interacts with a number of proteins that contain Src-homology-3 (SH3) domains . We expressed a fragment of dynamin2 containing only the GED and PRD and a truncated version of dynamin2 that lacked the PRD; both proteins were expressed well (Fig. 3A, E). While the GED/PRD fragment failed to bind to the IgFn domain of Kalirin, dynamin lacking its PRD (ΔPRD) continued to bind. Attempts to express the Middle/PH/GED or Middle domain fused to GFP led to insoluble aggregates.
We next wanted to determine whether isoforms of Kalirin that lacked the IgFn domain interacted with the GTPase domain of dynamin. The dynamin2/GTPase-GFP fusion protein and Kalirin7 or Kalirin12 were co-expressed in pEAK Rapid cells (Fig. 3F). The GTPase domain of dynamin2 interacted with Kalirin12, but not with Kalirin7. Taken together, our data indicate that the GTPase domain of dynamin binds to the IgFn domain of Kalirin in a GTP-dependent manner.
The IgFn domain of Kalirin disrupts dynamin self-assembly
Data from several experiments were quantified following normalization to the amount of dynamin pelleted in the presence of liposomes (Fig. 4D). The ability of liposomes to induce the oligomerization of purified dynamin was blocked by the addition of recombinant GST-IgFn domain (Fig. 4D). In these studies, the molar ratio of GST-IgFn:dynamin was approximately 5:1. Kalirin binds in a GTP-dependent manner to the GTPase domain of dynamin, blocking the ability of dynamin to oligomerize, and presumably to activate, upon interacting with phospholipids [18, 42]. These data suggest an inhibitory role for Kalirin12 in regulating dynamin-mediated trafficking.
Overexpression of Kalirin12 or IgFn disrupts endocytosis of transferrin in PC12 cells
Overexpression of Kalirin12 disrupts endocytosis of transferrin in primary neurons
IgFn domains distinguish isoforms of Kalirin/Trio
The IgFn domain of Kalirin binds to the GTPase domain of dynamin, inhibiting dynamin self-assembly. Although the dTrio gene does not encode IgFn domains, the C. elegans unc-73 gene generates isoforms that include tandem IgFn domains [10, 45, 46]. Mammalian Trio has a single Ig domain that binds RhoA, increasing its GEF activity ; RhoA does not bind to the IgFn domain of Kalirin (data not shown). The IgFn regions of mammalian Kalirin and Trio are more divergent than any other domain . In addition to Kalirin12, only Duet, which lacks the spectrin-repeats and first GEF domain of Kalirin12, contains the tandem IgFn domains .
IgFn domains, with their 7 anti-parallel β-sheets, often serve as protein-protein interaction sites and are more common in extracellular than intracellular proteins [11, 48, 49]. Intracellular proteins with IgFn domains include titin, with 300 Ig domains, and short smooth muscle myosin light chain kinase, with three Ig domains and one Fn domain [11, 49]. When mechanically stretched, the Ig and Fn domains of titin vary in the force required for unwinding, with Fn domains generally disrupted more easily than Ig domains. With Kalirin12 linked to plasma membrane phosphoinositides through its Sec14p domain  and to dynamin, it is conceivable that force-mediated unwinding of the IgFn domain could occur.
Kalirin12 interacts with dynamin
Dynamin is crucial for membrane fusion and fission during exocytosis and endocytosis [14, 35]. Our data indicate that the IgFn domain of Kalirin binds dynamin in vitro and in vivo (Figures 1 and 2), and in a GTP-dependent manner (Figure 3). Mutation of Lys44, a key residue in the GTP binding site of dynamin2 , reduced the binding of dynamin2 to Kalirin-IgFn. In the presence of GTP or GTPγS, the binding of dynamin2 to Kalirin-IgFn was increased. While Kalirin12 and Kalirin-IgFn bound to the 35 kDa GTPase domain of dynamin2, Kalirin7, which lacks the IgFn domain, did not (Figure 3).
Both dynamin and Kalirin are multiply phosphorylated and their interaction may be regulated by phosphorylation state [50–52]. Constitutive phosphorylation of dynamin is catalyzed by protein kinase C and Cdk5; along with synaptojanin, amphiphysin, and epsin, dynamin must be dephosphorylated before it can assemble and promote vesicle scission [52–54]. Kalirin is also phosphorylated by Cdk5 and rapidly dephosphorylated by protein phosphatase 1 under basal conditions . Dynamin interacts with a variety of proteins through its C-terminal proline-rich domain, targeting it to specific sites of action . Whether the two SH3 domains of Kalirin bind to the proline-rich domain of dynamin has not yet been investigated.
The Kalirin-IgFn domain blocks dynamin self-assembly and inhibits dynamin-mediated endocytosis
Dynamin, through its GTPase activity, functions as a mechanoenzyme, facilitating membrane fission [14, 34, 37]. Self-assembly is an essential step in activating the GTPase activity of dynamin [15–17, 42]. Using an in vitro assay  we demonstrated that the IgFn domain of Kalirin blocked liposome triggered dynamin self-assembly (Figure 4). Other proteins known to interact with the GTPase domain of dynamin in a GTP-dependent manner include the PHOX homology domain of phospholipase D, which acts as a GTPase activating protein (GAP) for dynamin . The SH3 domain of phospholipase C-γ1 binds to the proline rich domain of dynamin1 and functions as a guanine nucleotide exchange factor (GEF) for dynamin1 . The fact that exogenous Kalirin12 inhibited uptake of transferrin (Figures 5 and 6), a dynamin-mediated process, suggests that a similar interaction may be used normally in neurons. Tethered to the membrane via its Sec14p, PH or spectrin-like repeats and to dynamin via its IgFn domain, Kalirin12 could link activation of dynamin to membrane deformation and cytoskeletal reorganization.
A role for Kalirin in endocytosis
Exocytosis and endocytosis, which are prevalent at growth cones , must occur in a carefully balanced and spatially controlled manner in response to multiple attractive and repulsive signals. Similarly, the insertion and retrieval of the receptors prevalent in dendritic spines requires carefully controlled, signal mediated exocytosis and endocytosis [22, 59]. Kalirin12 is well equipped to play a key role in both processes. Kalirin12, like its Drosophila paralog, dTrio, is localized to vesicular structures and membranes in neuronal processes and growth cones [8, 27]. In addition to a general role in endocytosis, the C. elegans paralog, UNC-73, may affect growth cone guidance by regulating the localization of UNC-40, a growth cone guidance cue receptor [28, 45, 60, 61]. In the adult brain, expression of Kalirin7, which does not interact with the GTPase domain of dynamin, greatly exceeds expression of Kalirin12, but both proteins can be identified at the PSD . The N-terminal region of Kalirin7, which is shared by Kalirin12, localizes to the sub-plasma membrane region of non-neuronal cells, where it inhibits the uptake of transferrin . Both the phosphoinositide-binding Sec14p-domain of Kalirins7 and 12 and their spectrin-like repeat regions, which have been shown to interact with Arf6-GDP [62, 63], could contribute to additional interactions affecting endocytic trafficking in dendritic spines and axonal terminals.
The IgFn domain unique to Kalirin12 interacts with the GTPase domain of dynamin in a GTP-dependent manner and inhibits dynamin oligomerization. Transient interactions between dynamin and Kalirin12, with its N-terminal phosphatidylinositide binding Sec14p domain, multiple spectrin-like repeats and RhoGEF domains, may facilitate the coordination of endocytic trafficking and changes in the actin cytoskeleton.
Supported by DA-15464 and DA-16871. We thank Darlene D'Amato, Yanping Wang and Jianping Huang for the many things they each did to make these experiments possible, and Drew Kiraly and Dr. Victor Francone for their comments. We thank Dr. Pietro De Camilli and Dr. Mark McNiven for their gifts of dynamin expression vectors.
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