The brain in three crustaceans from cavernous darkness

Background While a number of neuroanatomical studies in other malacostracan taxa have recently contributed to the reconstruction of the malacostracan ground pattern, little is known about the nervous system in the three enigmatic blind groups of peracarids from relict habitats, Thermosbaenacea, Spelaeogriphacea, and Mictocarididae. This first detailed description of the brain in a representative of each taxon is largely based on a combination of serial semi-thin sectioning and computer-aided 3D-reconstructions. In addition, the mictocaridid Mictocaris halope was studied with a combination of immunolabeling (tubulin, nuclear counter-stains) and confocal laser scanning microscopy, addressing also the ventral nerve cord. Results Adjacent to the terminal medulla, all three representatives exhibit a distal protocerebral neuropil, which is reminiscent of the lobula in other Malacostraca, but also allows for an alternative interpretation in M. halope and the thermosbaenacean Tethysbaena argentarii. A central complex occurs in all three taxa, most distinctively in the spelaeogriphacean Spelaeogriphus lepidops. The deutocerebral olfactory lobe in M. halope and S. lepidops is large. The comparably smaller olfactory lobe in T. argentarii appears to be associated with a unique additional deutocerebral neuropil. A small hemiellipsoid body exists only in the protocerebrum of T. argentarii. Distinctive mechanosensory neuropils corresponding to other malacostracans are missing. Conclusions The considerable reduction of the optic lobe in the studied taxa is higher than in any other blind malacostracan. The large size of deutocerebral olfactory centers implies an important role of the olfactory sense. The presence of a distinctive central complex in the blind S. lepidops adds further support to a central-coordinating over a visual function of this structure. The lack of a hemiellipsoid body in M. halope and S. lepidops suggests that their terminal medulla takes over the function of a second order olfactory center completely, as in some other peracarids. The reduction of the optic lobe and hemiellipsoid body is suggested to have occurred several times independently within Peracarida. The missing optic sense in the studied taxa is not correlated with an emphasized mechanosense.


General aspects
Peracarida are one of the most species-rich taxa of Malacostraca. While more familiar peracarid subtaxa, such as Isopoda or Amphipoda, show an impressive morphological disparity which allowed them to adapt to diverse ecosystems, little is known about the three subtaxa investigated here (see Figure 1), all of which occur in relict habitats that are accessible only with considerable difficulty and risk. Mictocarididae and Spelaeogriphacea are found in a few anchialine or fresh-water caves that are punctually distributed over erstwhile Gondwana, while Thermosbaenacea live in thermal springs as well as in anchialine and fresh-water caves.
While the monophyly of Spelaeogriphacea and Thermosbaenacea is well-supported [1], the situation in Mictocarididae is less clear. Some authors assumed monophyletic Mictacea, comprising Mictocarididae and Hirsutiidae ( [2], see also [3,4]). Others suggested that Mictocarididae are a sister group to Spelaeogriphacea and assigned Hirsutiidae to the separate taxon Bochusacea [5,6]. Here the abbreviation MST sums up the three taxa Mictocarididae, Spelaeogriphacea, and Thermosbaenacea without any phylogenetic implications-well aware that Mictacea, Spelaeogriphacea, and Thermosbaenacea have been suggested to form a monophylum nested within Peracarida by some authors [7,8].

Adaptations to darkness
All representatives of MST live in the darkness and lack eyes. Eyestalks are still present in Mictocarididae [37], Spelaeogriphacea [38], and in the thermosbaenacean subtaxon Halosbaenidae [39], but are absent in other thermosbaenaceans [39][40][41] and Hirsutiidae [37]. Various crustacean neuroanatomists addressed the correlations between lifestyle and adaptations of the visual (e.g., [10,30,42,43]), olfactory (e.g., [13,[19][20][21]), mechanosensory centers (e.g., [31]), or unpaired midline neuropils [43,44]. One focus of this study is to infer whether and how the brain has changed in correlation to reductions of the eyes and eyestalks in MST, i.e., whether optic neuropils have been reduced, and whether the loss of visual input has been compensated by a notable emphasis on the olfactory or mechanosensory pathways or other parts of the nervous system.

Phylogenetic aspects
The morphology of the brain in MST may furthermore help resolve their controversial phylogenetic positions within Peracarida. The comparison of neural structures had considerable impact on arthropod phylogenetics in recent years (e.g., [15,16,45]). A close relationship between Mictocarididae (Hirsutiidae were excluded from analyses) and Spelaeogriphacea was supported by most studies, but their exact position within Peracarida remains debatable [1,4,8,46,47]. Thermosbaenacea have repeatedly been placed as a sister group to all (remaining) Peracarida [1,48,49]. Other authors placed them in close relationship with Mictacea [8,47,50] or elsewhere within Peracarida [46,51,52].
We investigated one species of each taxon combining serial semi-thin sections with computer-aided 3Dreconstruction, a method well-accepted to reveal the brain's soma clusters, major nerves, and neuropils (e.g., [20][21][22]53,54]), but also the relationships of these neural structures to other organ systems within the cephalon [35,36]. In the mictocaridid representative Mictocaris halope, we were fortunate to obtain several additional specimens preserved for immunolabeling with an antibody against acetylated α-tubulin and nuclear counterstaining, which allowed for a detailed tracing of neurite tracts and neuropil texture in this species. Our morphological description in all three species investigated adds new characters to the phylogenetic debate and contributes to a more coherent picture of brain evolution within Malacostraca.

Note on terminology
We widely apply the neuroanatomical terminology suggested for the decapod brain by Sandeman et al. [55], and extend it only where necessary. In comparison to the many soma clusters in Decapoda, for which Sandeman et al. [55] suggested a labeling that is widely accepted, the studied representatives of MST feature considerably less soma clusters that are separated from each other by soma-free regions. A soma cluster in this sense may comprise somata from one or more brain regions. We refer to somata in six different brain regions, applying a simple nomenclature schematically explained in Figure 2A: anterolateral somata (AlS) surround the optic lobes and the lateral protocerebrum; anterodorsal somata (AdS) lie dorsally in the median protocerebrum; anteroventral somata (AvS) lie ventrally in the median protocerebrum; lateral somata (LS) lie laterally in the deutocerebrum; ventromedial somata (VmS) lie ventrally in the deutocerebrum; posterior somata (PS) lie laterally and dorsally in the tritocerebrum.
The morphological description of spatially extended structures often requires giving border points and using directional terms, such as 'run into' or 'project anteriorly'. In our work, this does not imply any physiological, ontogenetic, or evolutionary direction. All positions given (such as anterior or dorsal) refer to the body axis. The term 'medial' is used, when two paired structures lie near the midline of the animal, whereas the term 'median' is used, when an unpaired structure lies directly in the midline of the animal. The identification of blood vessels was based on Wirkner and Richter [35] for M. halope and S. lepidops, and on Wirkner and Richter [36] for T. argentarii.
Sullivan and Beltz [23] pointed out that what is generally referred to as the 'terminal medulla' in the malacostracan protocerebrum is rather an assembly of several neuropils than one coherent neuropil. We use 'terminal medulla' as an inclusive term for all that neuropil of the lateral protocerebrum which is not clearly specified from its surroundings by shape, texture, or spatial separation. The described 'small lateral neuropils' of our study are specified by their dense texture and clear spatial separation from the terminal medulla in the periphery of the lateral protocerebrum. In contrast to the terminal medulla, our criteria for the identification of a hemiellipsoid body are its distally convex shape, its dense texture, and its anteromedial position within the lateral protocerebrum, as found in other Malacostraca [22,55]. The brain comprises a number of tracts, which we here divided into vertical (VT), longitudinal (LT), and transverse tracts (TT), and numbered consecutively. If tracts in different species occur in the corresponding position, they received the same label (e.g., LT1 was found in M. halope and S. lepidops). All vertical and longitudinal tracts described occur in pairs. Transverse tracts are unpaired and midline-spanning if not otherwise noted.

Major results
As in other Peracarida, there are no signs of a nauplius eye or nauplius eye-related neural structures in MST. In all three species studied, the brain is a syncerebrum composed of protocerebrum, deutocerebrum, and tritocerebrum. The protocerebrum is divided into a distal protocerebral neuropil (which is here labeled 'Ia' due to its unresolved homology relationships), the lateral protocerebrum (Ib), and the unpaired median protocerebrum (Ic). A distinctive hemiellipsoid body occurs only in the lateral protocerebrum of T. argentarii. The deutocerebrum (II) gives rise to the antenna 1 nerve and includes the olfactory lobe. The tritocerebrum (III) gives rise to the antenna 2 nerve. Additional nerves arise mainly from the deuto-and tritocerebrum. One post-esophageal commissure interconnects the paired halves of the tritocerebrum transversely. On each side, the tritocerebrum is connected to the posterior-next ganglion by a soma-free connective. S. lepidops features a separate mandibular ganglion, while in M. halope and T. argentarii, a subesophageal ganglion is composed of several neuromeres. Somata are arranged in only a few, often large clusters around the brain's neuropil. Soma clusters differ interspecifically in size and shape (see above for terminology of these soma clusters). Each species features a number of neuropils, the most prominent of which are the central body and protocerebral bridge. Proto-, deuto-, and tritocerebrum are arranged along a neuraxis which deflects from the body axis anteriorly and shows a different course in each species.
Mictocaris halope (Mictocarididae) General aspects M. halope lacks compound eyes. The pyriform eye stalk inserts anteriorly in the cephalon (position indicated in Figure 1C). Antenna 1 exhibits a prominent 3-segmental peduncle bearing a 4-segmented inner and an 8-segmented outer flagellum ( [37]; see also Figure 1C). Each of the five distalmost segments of the outer flagellum bears one very long aesthetasc ( [37]; see also Figure 1C). Antenna 2 exhibits a prominent 4-segmented peduncle, which bears a large scale on its second segment and, distally, a 35segmented flagellum [37]. Bowman and Iliffe [37] described several loosely arranged setae both on antenna 1 and 2.
The distal protocerebral neuropil (Ia) is situated directly lateral to the lateral protocerebrum (Ib, Figures 2B-E, 3H, 4A), which is adjoined by the median protocerebrum (Ic) ventromedially ( Figures 2B-H, 3A,C, 4A). In comparison to the other species, the olfactory lobe is relatively large and ellipsoid, protruding laterally from the rest of the deutocerebrum (Figures 2B-E,H-J, 3A,C, 4E,G,  I). In lateral aspect, the lateral protocerebrum is situated posterodorsal to the median protocerebrum, and the latter anterodorsal to the deutocerebrum ( Figures 2E, 3C). The neuraxis flattens posteriorly to take on the anteroposterior course of the ventral nerve cord (III, SG; Figures 2E, 3C). The unpaired brain artery (BA) enters the median protocerebrum from the posterior direction ( Figure 2D). The artery first splits into an upper and a lower branch ( Figure 2G), each of which bifurcates into one pair of sub-branches leaving the median protocerebrum laterally ( Figure 2H).

Soma clusters
The brain in M. halope features three pairs of soma clusters and one unpaired soma cluster (i.e., altogether seven clusters).
The first paired soma cluster is composed of anterolateral somata (AlS), which cover the distal protocerebral neuropil and lateral protocerebrum dorsally, ventrolaterally, and posteriorly ( Figures 2F,H The third paired soma cluster is minute, only comprising a few ventromedial somata (VmS) that lie ventrally in the deutocerebrum between the olfactory lobe and the root of the antenna 1 nerve (A1Nv; Figures 2H, 3B-D).
The unpaired soma cluster comprises anterodorsal somata (AdS) and anteroventral somata (AvS) and extends from the dorsal ( Figures 2F-H

Neuropils
Distal protocerebral neuropil (Ia) The distal protocerebral neuropil (Ia) has a spheroidal shape and appears as a uniformly structured neuropil that is in part confluent with the terminal medulla ( Figures 2B-E,H,J, 3E-H, 4A). In our histological and immunocytochemical preparations, we detected neither any nerve nor tract extending from the distal protocerebral neuropil into the eyestalk.
Lateral protocerebrum (Ib) On each side, the lateral protocerebrum comprises, on the one hand, the large terminal medulla (TM; Figures 2B-H,J, 3A,C,E-H, 4A,F) and, on the other hand, three small lateral neuropils (SLN1-3 in Figure 3E-H; see also SLN3 in Figure 2J). The terminal medulla is evenly textured, with subcompartments Each of these tracts is associated with the central body, one passing it anteriorly (TT2) and one posteriorly (TT3, Figure 4C,D). The anterior of these tracts sends neurites into the central body where the neurites form a conspicuous chiasm with their counterparts from the other body side. The posterior tract contributes neurites to the subcompartments of the central body (arrowheads in Figure 4C). The 4 th transverse tract (TT4) interconnects the anteromedial region of the deutocerebrum of both body sides and is slightly bent up in the middle (Figures 2I,  3E,G, 4H). Based on acetylated α-tubulin staining, this tract originates near the root of the antenna 1 nerve (arrows; Figure 4H). On each side, the 1 st longitudinal tract (LT1) extends along the ventral side of the median protocerebrum (Ic) in the posteroventral direction ( Figures 2G,H, 3E,F,H). For a short section, the tract leaves the surrounding neuropil of the median protocerebrum and is bordered only by a lateral branch of the brain artery and anteroventral somata ( Figure 2G,H).  Figure 2G,H). Immunolabeling reveals that the lateral root splits again into two neurite bundles (arrows in Figure 4I). The more lateral bundle proceeds directly into the center of the olfactory lobe (ON; Figures 2H, 4I), while the more medial bundle forms a decussation with the olfactory globular tract directly medial to the olfactory lobe ( Figure 4I). Distally, each antenna 1 nerve soon splits into several small branches (e.g., Figure 2B

Anatomy of the ventral nerve cord
The ventral nerve cord of Mictocaris halope is composed of segmental ganglia which are interconnected by pairs of soma-free longitudinal connectives ( Figure 5). The mandibular, maxillular, and maxillar neuromeres together form a subesophageal ganglion, while each thoracic and pleonic segment features a separate ganglion. The somata of each ganglion are arranged in one midline-spanning cortex, with most somata situated ventrolaterally in the ganglion. The segmental neuropil of both sides is confluent in the midline of each ganglion. Thus, true (free) commissures do not exist in M. halope ( Figure 5).

Subesophageal ganglion
The subesophageal ganglion features one large soma cortex, so that soma-free connectives between its three neuromeres are missing ( Figure 5A). A pair of connectives links the subesophageal ganglion anteriorly to the tritocerebrum and posteriorly to the (first thoracic) maxillipedal ganglion ( Figure 5A), respectively. Laterally, each of the three hemineuromeres of the subesophageal ganglion gives rise to an anterior and a posterior appendage nerve; both nerves projecting straight laterally into their appendage ( Figure 5A). The anterior nerve soon splits into several branches (arrows; Figure 5C), whereas the more posterior nerve remains unbranched (arrowheads; Figure 5C). Other (e.g., intersegmental) nerves in the subesophageal region could not be detected. The mandibular and maxillular neuropils are fused. The maxillar neuropil is set off from the latter by a very short connective-like longitudinal neurite bundle. Both the mandibular/maxillular and the maxillar neuropil are fused with their counterpart on the other body side and embedded in the soma cortex ( Figure 5A). Amongst the numerous neurites crossing the midline, a distinct commissure-like anterior and posterior 'tract' (sensu [56]) are discernible in each subesophageal neuromere (see e.g., in the maxillular neuromere, Figure 5B).
Thoracic ganglia 1 to 8 The first thoracic segment is associated with the maxillipeds. The anatomy of the corresponding ganglion is more similar to the other thoracic ganglia than to the maxillar ganglion in terms of size and segmental nerve arrangement. Two segmental nerves leave each thoracic hemiganglion laterally projecting into the appendages ( Figure 5D). These segmental nerves are thicker than the segmental nerves of the subesophageal ganglion. An intersegmental nerve projects from each connective laterally into the periphery, starting with the connective between the (first thoracic) maxillipedal segment and the second thoracic segment ( Figure 5D). These intersegmental nerves split into three branches.
The main branch extends further in the lateral direction; two more slender branches extend anteriorly and posteriorly, respectively (arrows Figure 5D). Both latter branches are connected to the segmental nerves of the anterior and posterior adjacent segments, forming a lateral longitudinal neurite bundle. The laterally extending main branch of the intersegmental nerve could not be traced farther. In contrast to the subesophageal neuromeres, no distinct transverse tracts could be identified within thoracic ganglia.
Pleonic ganglia 1 to 5 Pleonic ganglia are smaller than thoracic ganglia ( Figure 5E). Each hemiganglion gives rise to one slender pleopod nerve ( Figure 5E). An intersegmental nerve arises laterally from each connective of the pleon and splits immediately into three branches similar to the situation in the thoracic ganglia ( Figure 5E), one branch extending posterolaterally, one anteriorly, and one posteriorly. The anterior and posterior branches form, together with the corresponding branches of other segments, a lateral longitudinal neurite bundle (arrows, Figure 5E). The posterolateral branch could be traced into the posteriorly adjacent segment until the lateral border of the body. Thus, we suggest, that this branch of the intersegmental nerve innervates the tegument and/or musculature of the lateral body wall. As in the thorax, distinct transverse tracts within the ganglia could not be observed.
Terminal ganglion The terminal ganglion, situated in the sixth pleomere, is larger than the pleonic ganglia 1 to 5 ( Figure 5F). Five nerves arise from each hemiganglion (labeled 1-5; see Figure 5F,G). Nerves 1 and 2 extend laterally. These nerves could not be traced to their destination in the periphery. As they do not project towards the uropod or telson, they may innervate the tegument or musculature of the sixth pleomere. Nerves 3, 4 and 5 extend posterolaterally ( Figure 5F). While nerve 4 could be traced into the uropod ( Figure 5G), nerves 3 and 5 proceed towards the telson. Besides several neurites that cross the midline, the terminal ganglion features two commissure-like transverse tracts (red and yellow arrows; Figure 5F). The more anterior transverse tract (red arrows; Figure 5F) is closely associated with the nerves 1 and 2, the more posterior transverse tract (yellow arrows; Figure 5F) is closely associated with the nerves 3 and 4. An intersegmental nerve arises from the connective between pleonic ganglion 5 and the terminal ganglion.
The main branch gives rise to several fine sub-branches that extend anteriorly and posteriorly to innervate the periphery (white arrows; Figure 5F).
Lateral neurite bundle A pair of lateral longitudinal neurite bundles (arrows, Figure 5D, E) is situated lateral to the ventral nerve cord, extending from the first thoracic through the sixth pleonic segment. As described above, these lateral neurite bundles are supplied by neurites arising anteriorly and posteriorly from the intersegmental nerves. While the lateral neurite bundles in the thorax are additionally associated with the segmental nerves, this is Spelaeogriphus lepidops (Spelaeogriphacea) General aspects S. lepidops lacks compound eyes. The elongate, ellipsoid eye stalk inserts anteriorly in the cephalon (position indicated in Figure 1A). Antenna 1 exhibits a prominent 3-segmental peduncle bearing an up to 40-segmented inner and an up to 36-segmented outer flagellum ( [38]; see also Figure 1A,B). The distal three-fourths of the outer flagellum exhibit a series of short aesthetascs ( [38]; see also Figure 1A,B). Antenna 2 exhibits a prominent 4-segmented peduncle, which bears a small scale on its second segment and, distally, an about 70-segmented flagellum [38]. Gordon [38] described fields of conical papilla on antenna 1 and rows of setae both on antenna 1 and 2, but found no statocysts. The distal protocerebral neuropil (Ia) and the lateral protocerebrum (Ib; Figure 6B,C,D) are located in the eyestalk (St; Figure 6E

Soma clusters
The brain of S. lepidops features five pairs of soma clusters and one unpaired soma cluster (i.e., altogether eleven soma clusters).
The unpaired soma cluster consists of anteroventral somata (AvS) that lie ventrally in the median protocerebrum (Ic; Figures  The first paired soma cluster consists of anterolateral somata (AlS, arrowheads), surrounding the neuropil of the distal protocerebral neuropil (Ia; Figures 6E, 7A,C) and covering the anterior and lateral region of the lateral protocerebrum (Ib; Figure 7A-D). Distally, this soma cluster extends far into the eyestalks (St; Figure 6E).
Also the second paired soma cluster consists of anterolateral somata (AlS, arrows), but it lies apart from the previous one, dorsally in the lateral protocerebrum (Ib; Figure 7A-D). The anterodorsal and posterior regions of the lateral protocerebrum as well as the protocerebral tracts are not covered by somata.
The third paired soma cluster consists of anterodorsal somata (AdS) that are situated dorsally and dorsolaterally in the median protocerebrum (Ic; Figures 6F-H, 7A-D). Each cluster shows a long dorsal extension and may be connected to its counterpart by a thin midline-spanning bridge consisting of only a few somata (AdS; Figures 6F,  7A,B).
The fourth paired soma cluster consists of lateral somata (LS) situated dorsally, laterally, and posteriorly in the olfactory lobes (ON; Figures 6H,I, 7A-D) and dorsolaterally in the rest of the deutocerebrum (II; Figure 7A-D). Also this cluster has a long dorsal extension (LS; Figures 6H, 7A-D). Although it is here described as a separate soma cluster, thin extensions of only a few somata may connect it to neighboring soma clusters, respectively. The medial sides of the deutocerebrum lack somata.
The fifth paired soma cluster consists of posterior somata (PS) that lie posterodorsally in the tritocerebrum (III), opposite to the root of the antenna 2 nerve (A2Nv; Figures 6J-L, 7A,C). It has a long extension projecting posterodorsally (PS; Figures 6L, 7A-D).
In addition to the eleven large soma clusters in the periphery of the brain, several single somata are scattered within the neuropil of the median protocerebrum (Ic; see Figure 6F,G).

Neuropils
Distal protocerebral neuropil (Ia) The distal protocerebral neuropil is a small and distinct spheroidal neuropil, which is uniformly structured and directly borders the lateral protocerebrum (Ib; Figures 6B-E, 7F-H). It is directed towards the tip of the eyestalk (St; Figure 6E).

Lateral protocerebrum (Ib)
The terminal medulla is half as long as the eyestalk, shows an ellipsoid shape, and constitutes the only neuropil in the lateral protocerebrum of S. lepidops (TM; Figures 6A-E, 7A,C,E-H).
Median protocerebrum (Ic) The central body (CB) appears as a densely textured, spindle-shaped neuropil that lies horizontally across the center of the median protocerebrum (Ic; Figures 6F,G, 7E-H). It is anteriorly subdivided into several small vertical lamellae ( Figure 6F). The protocerebral bridge (PB) is composed of a pair of elongated neuropils lying horizontally at the dorsal end of the median protocerebrum that are connected across the midline via a thin tract (Ic; Figures 6F, 7E-H). On each body side, an elongated ventromedial protocerebral neuropil (VmPN) extends diagonally through the ventromedial region of the median protocerebrum (Ic; Figures 6F,G, 7E,F,H).
Anteriorly, the neuropil fuses with its surroundings. Its posterior end lies anterior to the root of the antenna 1 nerve (A1Nv; Figure 7H). The lateral accessory lobe (LAL) lies laterally in the median protocerebrum, lateral to the central body (Ic; Figures 6F,G, 7E-H). Its texture is denser than the surrounding neuropil.
Deutocerebrum (II) With respect to the size of the brain, the olfactory lobe (ON) in S. lepidops is comparably smaller than that in M. halope. The olfactory lobe in S. lepidops shows a nearly spheroidal shape and is composed of numerous spheroidal olfactory glomeruli (ON, points; Figure 6H,I). The unpaired median antenna 1 neuropil (MAN) spans across the midline of the deutocerebrum (II; Figures 6H, 7E-H). Its lateral end is slightly bent posteriorly (MAN; Figure 7G). The lateral antenna 1 neuropil (LAN) lies in the dorsal region of the deutocerebrum (II; Figures 6I, 7E,G,H), close to the olfactory lobe (ON; Figure 6I).  Figures 6G, 7E,G). The ventral portion of each olfactory globular tract pervades the ventromedial protocerebral neuropil (VmPN; Figures 6G, 7E). One soma-free tritocerebral commissure (TC) arises from the tritocerebrum dorsomedially. The commissure performs a posterodorsal arc when interconnecting both halves of the tritocerebrum transversely ( Figures 6A,C,D,L, 7A,E,G,H). On each side, a posttritocerebral connective connects the tritocerebrum (III) to the mandibular ganglion (MdG; Figures 6A,C,D, 7A,C). It is dorsoventrally flattened like the tritocerebrum (Figures 6L, 7E).
The 1 st vertical tract (VT1) connects the median protocerebrum with the deutocerebrum and is situated posterior to the lateral accessory lobe (LAL; Figure 7E,G,H). The 2 nd vertical tract (VT2) spans between the dorsal and ventral region of the median protocerebrum (Ic), and lies anterior to the central body (CB; Figure 7F,H). The (vertical) Y/Z, the X, and W tracts arise from the dorsal side of the central body and extend dorsally towards the protocerebral bridge. The Y/Z and X tracts pass the olfactory globular tract anteriorly and were traced as far as the protocerebral bridge. In contrast, the W tract passes the olfactory globular tract posteriorly, and is not associated with the protocerebral bridge ( Figure 7E Figure 7F). The 1 st longitudinal tract (LT1) connects the anterior region of the median protocerebrum with the anterior region of the deutocerebrum. At the midpoint of its way through the ventral region of the median protocerebrum, the 1 st longitudinal tract (LT1) leaves the surrounding neuropil, so that its middle portion is only surrounded by anteroventral somata ( Figure 6G). On each side, an 8 th transverse tract (TT8) connects the nerve root of the tegumentary nerve to the medial region of the tritocerebrum. On its way, the tract remains near the surface of the tritocerebrum, before turning ventrally inside (III; Figure 6J).

Nerves
The antenna 1 nerves (A1Nv) enter the deutocerebrum (II) from the anteroventral direction ( Figures 6B,D,F,G,  7C). Proximally, each nerve splits into a thick medial and a thin lateral root. The lateral root (A1Nv, rocket) proceeds into the center of the olfactory lobe (ON; Figure 6F), while the medial root enters the rest of the deutocerebrum. Distally, each antenna 1 nerve gives rise to three smaller branches (A1Nv; Figure 6B). The prominent antenna 2 nerve (A2Nv) enters the tritocerebrum (III) from the ventrolateral direction ( Figures 6B,C,D,J, 7C,E). After Tethysbaena argentarii (Thermosbaenacea) General aspects T. argentarii lacks compound eyes and eyestalks ( Figure 1D, E). Antenna 1 exhibits a 3-segmented peduncle bearing an up to 5-segmented outer and an up to 10-segmented inner flagellum ( [57]; see also Figure 1D, E). Unlike in the other species, the up to nine-segmented antenna 2 of T. argentarii is considerably less prominent than antenna 1 ( [57]; see also Figure 1D, E). Simple setae are loosely distributed over antenna 1 and 2. In addition, the peduncle of antenna 1 is equipped with feather-like (setulated) setae [57].
The distal protocerebral neuropil (Ia) is situated directly lateral to the lateral protocerebrum (Ib; Figure 8A-F). The lateral protocerebrum is directly connected to the median protocerebrum (Ic) ventromedially ( Figure 8A-D,F,G). On each side, the neuropil of the median protocerebrum shows a dorsal, an anterior, and a lateral bulge ( Figure 8C,F). The median protocerebrum (Ic) lies dorsal to the deutocerebrum (II; Figure 8A Figure 8A-D). Posterior to the latter, the neuraxis takes on the anteroposterior course of the ventral nerve cord, parallel to the body axis ( Figures 8D, 9E).

Soma clusters
T. argentarii features one pair of soma clusters and one unpaired soma cluster (i.e., altogether three soma clusters).
The paired soma cluster is composed of all anterolateral somata (AlS), covering the distal protocerebral neuropil (Ia) and the lateral protocerebrum (Ib) almost completely ( Figure 9A-E).
All other somata of the brain are included in one large unpaired soma cluster. It is situated dorsally (AdS;
Lateral protocerebrum (Ib) The largest region of the lateral protocerebrum is constituted by the terminal medulla (TM; Figures 8E-G, 9F,G). The hemiellipsoid body (HE) is situated anteromedially in the lateral protocerebrum (Ib; Figures 8E, 9F,G). The anteromedial (distal) region of each hemiellipsoid body has a convex shape and is more densely textured than the rest of the hemiellipsoid body. Posterolaterally (proximally), the hemiellipsoid body (HE) is confluent with the terminal medulla (TM; Figure 8E). Furthermore, a glomerular small lateral neuropil (SLN4) is distinguishable directly anterolateral to each terminal medulla (TM; Figures 8E, 9F,G).
Median protocerebrum (Ic) An anteromedial protocerebral neuropil (AmlPN) protrudes anteriorly from the median protocerebrum on each body side (Ic; Figures 8A,  G, 9F,G). The medial region (arrow) of each anteromedial protocerebral neuropil (AmlPN) shows a significantly higher neuropil density than the surrounding neuropil ( Figure 8G). The unpaired central body (CB) lies horizontally across the center of the median protocerebrum (Ic; Figures 8H, 9F,G). The central body (CB) of T. argentarii is comparatively thick and shows a compartmentalization into altogether five spheroidal subunits (asterisks, Figure 8H). The protocerebral bridge (PB; Figure 8G,H) lies dorsally in the median protocerebrum (Ic), adjacent and directly dorsal to the central body (CB; Figures 8H,  9F,G). It is composed of two elongated subunits which are identifiable due to their comparatively dense neuropil texture ( Figure 8G,H); these subunits contact one another in the midline. Unlike in M. halope and S. lepidops, both of which feature a lateral accessory lobe, the median protocerebrum in T. argentarii (arrowheads in Figure 8C,H) does not show any compartmentalization or condensation of neuropil in the lateral region.

Deutocerebrum (II)
The olfactory lobe (ON) lies lateral to the rest of the deutocerebrum (II), receiving the lateral root of the antenna 1 nerve (A1Nv, rocket) from the anterior direction ( Figure 8D,I). It is composed of densely packed olfactory glomeruli (ON, points) whose exact shape could not be identified ( Figure 8I). A posterior accessory neuropil is situated posterolateral but slightly distant to each olfactory lobe (PAN; Figures 8A,D,I, 9F,G). The posterior accessory neuropil is embedded within lateral somata that are arranged in a long extension in this region (arrows, LS; Figures 8I, 9B-E). Since the tracts connecting the posterior accessory neuropil to the rest of the brain could not be traced through this group of lateral somata, it remains unclear whether the posterior accessory neuropil is associated with the olfactory lobe or with another region of the deutocerebrum. The texture of the posterolateral accessory neuropil is unstructured (PAN; Figure 8I). Further neuropils could not be distinguished within the deutocerebrum.
Tritocerebrum (III) Distinct neuropils could not be identified in the tritocerebrum in T. argentarii.

Tracts
The 3 rd transverse tract (TT3) is situated posterior to the central body and interconnects the lateral regions of the median protocerebrum (Ic; Figure 9F,G). The tritocerebral commissure (TC) interconnects the halves of the tritocerebrum (III) horizontally ( Figures 8A-C,K, 9A, B,F,G). It is anteroposteriorly flattened and has a minute anteroposterior hole in the midline. On each body side, a posttritocerebral connective (PTC) connects the tritocerebrum (III) to the mandibular ganglion (MdG; Figure 8A, D,K). Each posttritocerebral connective is dorsoventrally flattened and medially engraved by a large unpaired transverse apodeme that is associated to several mandible muscles and passes on the dorsal side of the connective.

Nerves
The prominent antenna 1 nerve (A1Nv) enters the deutocerebrum (II) from the anterior direction (Figures 8B, D,I, 9A,E), splitting proximally into a thick medial and a thin lateral root. The lateral root (rocket, A1Nv) proceeds into the center of the olfactory lobe (ON), while the medial root proceeds into the rest of the deutocerebrum ( Figure 8I). Distally, two smaller branches diverge from each antenna 1 nerve (A1Nv; Figure 8D). A lateral deutocerebral nerve (LDNv) enters the posterior side of each olfactory lobe (ON) from the lateral direction ( Figures 8A,  C,D, 9A,B,E). The antenna 2 nerve (A2Nv), which is thinner than the antenna 1 nerve in T. argentarii, enters the tritocerebrum (III) from the lateral direction ( Figures 8B,  D,J, 9A,E,G). A stomatogastric nerve (StNv) enters each half of the tritocerebrum (III) from the anteromedial direction ( Figure 8B,D,K). Distally, stomatogastric nerves from both body sides unite forming a single unpaired nerve (StNv) in front of the esophagus; this single nerve extends dorsally along the upper side of the gut (E, Figures 8A-D,J, 9A,B). The labral nerve (LbNv) enters the ventral side of the tritocerebrum (III) from the anterior direction ( Figure 8B,D).

Discussion
The general anatomy of the brain in the three investigated species, Mictocaris halope, Spelaeogriphus lepidops, and Tethysbaena argentarii, widely corresponds to the organization in other malacostracans, including the division of the protocerebrum into the subunits of lateral and median protocerebrum; the presence of deutocerebral olfactory lobes; and the location of major nerve roots (e.g., [10,11,22,24,31,55,58]). Although MST show only a few soma clusters, which obscures a comparison with the numerous soma clusters in Decapoda [55], the overall location of soma clusters in the brain is similar. In the following, we focus on morphological structures that have played a role in the debate on phylogenetic and evolutionary relationships.

Dislocation of brain parts from the eyestalk into the cephalic capsule
An eyestalk housing both the optic lobe and lateral protocerebrum, corresponding to the condition here described for the distal protocerebral neuropil and lateral protocerebrum in S. lepidops, occurs also in other taxa ([22]: Leptostraca; [23]: Stomatopoda, Decapoda; [11]: Anaspidacea, Mysidacea; [59]: Euphausiacea) and likely represents the malacostracan ground pattern (see also [22]). The brain parts were dislocated from the eyestalk into the cephalic capsule independently in several blind decapods [10] and M. halope (this study).

Problematic identity of the distal protocerebral neuropils (Ia)
In the malacostracan ground pattern, each optic lobe comprises three comparably large optic neuropils, termed the lamina, medulla (or external medulla), and lobula (or internal medulla), and an additional fourth, smaller optic neuropil termed the lobula plate, which has only been described in some taxa [22,30,60]. Apparently, in any case, a reduction of the optic lobes has occurred in MST, which exhibit only one distal protocerebral neuropil. In order to infer its evolutionary identity, the distal protocerebral neuropil has to be compared to neuropils and neuropil domains in the protocerebrum of other taxa.

Comparison to optic neuropils
In Leptostraca, Decapoda and Isopoda, the four optic neuropils can be identified and homologized on the basis of their interconnecting decussating and non-decussating tracts (see [30]), but comparable tracts were not identified in the small representatives of MST. In S. lepidops, the distal protocerebral neuropil is most plausibly interpreted as a single optic neuropil, since it is directed towards the tip of the eyestalk, as are the optic neuropils in Decapoda [19][20][21][22]30,43], Stomatopoda [10,43] or Euphausiacea [59]. Also in M. halope and T. argentarii, the distal protocerebral neuropil could be interpreted as a single optic neuropil. Yet this would not be supported by the position of the distal protocerebral neuropil, which lies laterally in the lateral protocerebrum, while the eyestalk in M. halope inserts much more anteriorly. With its spheroidal shape and even texture, the distal protocerebral neuropil in MST corresponds most closely to the lobula in other Malacostraca, but differs from the lamina and medulla, which are distally convex and flattened and exhibit a visibly columnar retinotopic texture of neuropil (see, e.g., [19,20,59]). The main function of the lobula in other malacostracans, and also in insects, lies within motion detection of compound eye input [43], which is certainly not the case in the eyeless representatives of MST. The lobula plate of other malacostracans [30,43,60] is, due to its small size, an unlikely candidate for homology with the distal protocerebral neuropil of MST.
Although size-reduction of the optic lobe has occured several times in Eumalacostraca, e.g., within Brachyura and Anomala [10], the most drastic reductions have obviously occurred within Peracarida. Hitherto, the representatives of MST (this study) are the only reported eumalacostracans which have lost (at least) two optic neuropils completely. Unpublished investigations (MEJS, SR, CSW) revealed that the blind cumacean Leucon nasica also lacks a lamina and a medulla, and that the tanaidacean Tanais dulongi with its rudimentary compound eyes lacks a lamina, but still features a small medulla and a lobula. Blind non-malacostracan crustaceans lacking both compound eyes and optic neuropils are Cephalocarida [54,61], Remipedia [62], and Mystacocarida [63]. Reductions or loss of visual brain centers are also common in blind representatives of other metazoan groups (reviewed by [64]).
(See figure on previous page.) Figure 9 Morphology of the brain in Tethysbaena argentarii. Soma clusters, neuropil, and internal structureclick on A and G for interactive 3D models.

Comparison to subunits of the lateral protocerebrum
An alternative interpretation of the identity of the distal protocerebral neuropil applies to M. halope and T. argentarii. In both species, the far-lateral position of the neuropil supports that it constitutes a lateral subunit of the terminal medulla. This counts also for the blind cumacean Leucon nasica, which exhibits a corresponding distal protocerebral neuropil posterolaterally in the terminal medulla, and which lacks optic neuropils (unpublished data by MEJS, SR, CSW). All optic neuropils would have been reduced completely in M. halope, T. argentarii, and L. nasica. Although Kenning et al. [22] have not reconstructed a comparable distal protocerebral neuropil in the malacostracan ground pattern, several other authors have described the terminal medulla in Stomatopoda, Decapoda, and Isopoda as an unspecific aggregation of structured and unstructured neuropils e.g., [11,23,65]. Also in Remipedia, a possible sister-group to Malacostraca [15], the protocerebral neuropil is laterally compartmentalized into sublobes, some of which correspond in position to the distal protocerebral neuropil [66,67]. In our view, the identity of the distal protocerebral neuropil in M. halope and T. argentarii remains unresolved. It could either represent an optic neuropil or a lateral subunit of the terminal medulla. Other interpretations are unlikely: Neither is the distal protocerebral neuropil homologous with the pronounced domain of pigment dispersing hormone (PDH) immunoreactivity in Decapoda, which is situated medially in the terminal medulla, receives axons from the optic neuropils, and has been suggested to function as a pacemaker of circadian clocks [68]. No PDH immunolabeling has been conducted in MST or any other eyeless arthropod, and information on circadian rhythms in blind arthropods is generally scarce (reviewed by [69]). Nor is the distal protocerebral neuropil homologous with the hemiellipsoid body, which is situated elsewhere, i.e., anteromedially or anteriorly in the lateral protocerebrum (Malacostraca: [22,32,65]; Remipedia: [66]; see below).

Unclear identity of the small lateral neuropils
Two small lateral neuropils comparable to those in M. halope and T. argentarii occur in the lateral protocerebrum of Leptostraca (labeled sN and X by [22]). Kenning et al. [22] homologized one with the eumalacostracan lobula plate. The position of the small lateral neuropils is different between Leptostraca and those in M. halope and T. argentarii, but we found three small lateral neuropils in the cumacean Leucon nasica (unpublished data by MEJS, SR, CSW), which correspond exactly to M. halope.

Central complex corresponds in detail to Decapoda
One of the most interesting structures in the tetraconate brain is certainly the central complex, an intricate cluster of two unpaired and one pair of neuropils (central body, protocerebral bridge; lateral accessory lobes) and their interconnecting tracts (reviewed by [29]: Crustacea; [70]: Hexapoda). The protocerebral bridge and central body have been described in most malacostracan subtaxa including MST (this study), Leptostraca [22], Stomatopoda [11], Decapoda [20,21,71], Euphausiacea, Anaspidacea [24], Isopoda [32,72]. Four conspicuous W, X, Y, Z tracts connect the protocerebral bridge with the central body on each side in Decapoda (e.g., [71]), Isopoda, Cumacea [29], and Leptostraca, a pattern which dates back to the ur-malacostracan [22] and has similarly been found in Remipedia [67] and Hexapoda (e.g., [73]). The lack of distinct W, X, Y, Z tracts in M. halope and T. argentarii and the reduced number of only three tracts in S. lepidops are here interpreted as derived. The lateralmost tract in S. lepidops is the only tract posterior to the olfactory globular tract, corresponding to the W tract in other malacostracans (e.g., [71]). Our interpretation of the other tracts in S. lepidops remains ambiguous. The two medialmost Z and Y tracts in Isopoda are spatially close (see Figure 2A in [29]), which might indicate that the single medialmost tract in S. lepidops is a product of fusion.
Since the subunits in T. argentarii are larger than in M. halope, considerable doubt remains on whether the spheroidal differentiation is homologous. In contrast, the vertical differentiation of the central body in S. lepidops corresponds to the "almost columnar appearance" in different Decapoda [71,74], Isopoda, Stomatopoda [43] and also Hexapoda (e.g., [43,44,75]).
The central complex in Hexapoda functions as a second order visual center, but also plays a major role in spatial learning, spatial memory, and in the integration of spatial information for locomotor control of walking and flight (reviewed by [70]). Several blind arthropods exhibit well-developed unpaired midline neuropils, such as Remipedia with their large protocerebral bridge [62,67] or Symphyla [9]. With S. lepidops and M. halope, we add two other species to this group.

Olfactory system Olfactory lobe
The relatively large size of the olfactory lobe in M. halope and S. lepidops (this study) co-occurs with a lack of eyes and reduction of optic neuropils, such as in other blind crustaceans like Cephalocarida [54] and Remipedia [67]. Yet an enlargement of the olfactory lobe is not necessarily the case in blind crustaceans. A comparably small olfactory lobe occurs in T. argentarii (this study) and the blind cumaceans Leucon nasica (unpublished data by MEJS, SR, CSW) and Diastylis rathkei ( [28]; see Figure 2C in [29]). In contrast, a large olfactory lobe occurs along with large optic neuropils in diverse malacostracans (e.g., [32]: Isopoda; [19][20][21]: Decapoda).
The elongated evenly-textured posterior accessory neuropil, which is set off the olfactory lobe in T. argentarii (this study), differs from the more compact glomerular accessory lobe that is associated with the olfactory lobe in Reptantia (e.g., [17,19,20,58]). Given their phylogenetic position [8], both structures must have evolved convergently. Whether the posterior accessory lobe constitutes an analogous olfactory center remains unclear, as its offgoing tracts were hard to trace.
Since M. halope and S. lepidops are blind and, given their large olfactory lobe, seem to depend largely on the olfactory sense, we may conclude in line with Sullivan and Beltz [23] that their widely undifferentiated terminal medulla has taken over the role of a second order olfactory center. The bifurcation of the olfactory globular tract in M. halope ( Figure 4E) is reminiscent of that in other malacostracans, whose olfactory globular tract splits to innervate the terminal medulla and hemiellipsoid body [11,23,65,77,79,80].
Also the tritocerebral 'antenna 2 neuropil' and 'tegumentary neuropil' , which are directly associated with the antenna 2 nerve and tegumentary nerve in diverse Malacostraca, were related to mechanosensory and motory function and assigned to the malacostracan ground pattern [22]. Although a thick antenna 2 nerve and a distinct tegumentary nerve occur also in M. halope and S. lepidops, their tritocerebral neuropils are either too large and indistinct (LTN) or situated too far ventrally (VTN) to be homologized unambiguously with the mentioned neuropils in other malacostracans. In fact, the ventral tritocerebral neuropil in M. halope and S. lepidops are more likely to be associated with the labral than with the antenna 2 nerve. A 'striated' or 'microglomerular' texture of tritocerebral neuropils, as reported in Isopoda [31,32] or Decapoda [21,89] is not apparent in the tritocerebrum of M. halope and S. lepidops.

Deutocerebrum and tritocerebrum in the light of sensory ecology
Based on the anatomy of the mouthparts in MST, two modes of feeding have been suggested: Either the animals scrape food particles from a substratum with their maxilla 1, then hold and move these particles with their mandibular palp, maxilla 2, and maxillipede, and finally chew them using their mandibular mola; or the animals bite directly into the substratum using their mandibular incisa and lacinia [37,90]. In any case, food has to be located in the darkness. The presence of a prominent olfactory lobe in M. halope and S. lepidops conforms well with the fact that the long antenna 1 in both species is equipped with several distal aesthetascs [37,38]. In its cavernous natural habitat, M. halope could be observed to swim primarily in midwater, the antennae being directed forward at an angle of about 60°to 90°from each other [37]. Interestingly while walking, the antennae of M. halope were held much wider apart at an angle approaching 180° [37], a behavior which seems in our view more suitable to catching floating particles than to touching for substrate. Also T. argentarii is able to swim vividly and, under laboratory conditions, the species has been observed to actively choose a vegetable instead of carnal nourishment [91]. This strongly supports that the olfactory lobe and hemi-ellipsoid body are functional despite of their comparatively small size, and that at least some of the described setae on the thermosbaenacean antenna 1 [57] are chemosensory. Apart from olfactory function, the fast swimming movements reported in all the three representatives of MST [37,38,91] and the considerable length of their antenna 1 and 2 (e.g., Figure 1) render likely that the appendages are involved in some sort of mechanosensory function. While the lateral antenna 1 neuropil and median antenna 1 neuropil in M. halope and S. lepidops are possible candidates for mechanosensory centers in the deutocerebrum, here it remains unclear why the tritocerebral mechanosensory neuropils reported in other malacostracans are absent in MST.

Degree of fusion in the subesophageal ganglion
The degree of fusion between subesophageal neuromeres varies considerably across Malacostraca, which hinders a reconstruction of the ground pattern. Free segmental ganglia connected by soma-free connectives occur in Leptostraca [10,22,97], S. lepidops, and T. argentarii (this study) and may represent the malacostracan ground pattern. The subesophageal ganglion in Euphausiacea comprises two neuromeres (Md, Mx1, see Figure 448IV in [10]), and in Stomatopoda [99], Decapoda [104], and Isopoda [100], it comprises the three subesophageal neuromeres (Md, Mx1, Mx2) as well as additional neuromeres of the thorax. M. halope is the only malacostracan with a subesophageal ganglion composed of exactly three neuromeres (this study). As this pattern has been found in Hexapoda (see [103]), some Myriapoda [105], and Cephalocarida [106], it has been suggested for the mandibulate ground pattern (discussed critically by [106]).

The terminal ganglion consists of at least two fused ganglia
The posteriormost ganglion of the malacostracan ventral nerve cord is situated in the sixth pleomere and commonly referred to as the terminal ganglion. Studies in Leptostraca [98], Mysida and Lophogastrida [107,108], Anaspidacea [109], Isopoda [101], or Decapoda (reviewed by [93]) revealed that the size of the terminal ganglion and its number of offgoing nerves exceed that in the pleonic ganglia 1 to 5, implying that the terminal ganglion is composed of two or more neuromeres. Correspondingly, five pairs of nerves arise from the terminal ganglion in M. halope, while only one segmental and one intersegmental nerve arise from the free pleonic ganglia 1 to 5, respectively (this study). We conclude that the terminal ganglion in M. halope consists of at least two fused neuromeres.

Conclusions
All three studied representatives of MST show a considerable size reduction of the optic lobe in correlation to blindness. Moreover, the number of optic neuropils was reduced from four in the malacostracan ground pattern [22] to one (or none). While the distal protocerebral neuropil in S. lepidops is best interpreted as the lobula, an alternative interpretation is possible in M. halope and T. argentarii. There, the distal protocerebral neuropil either represents the lobula (which would have been dislocated laterally), or it represents a lateral subunit of the terminal medulla. The presence of a distinctive central complex, especially in S. lepidops and M. halope, adds support to a central coordinating function of this structure, irrespectively of whether its sensory input is visual (see also [43,44,70]). Detailed correspondences in the arrangement of W, X, Y, Z tracts of the central complex between Spelaeogriphacea, Isopoda, Cumacea, Leptostraca and Decapoda support that a central complex was already present in the ancestor of Malacostraca [22,29]. The large olfactory lobe in M. halope and S. lepidops implies an important role of the olfactory sense. Although T. argentarii exhibits only a small olfactory lobe, the unique posterior accessory lobe in the deutocerebrum may play an olfactory role analogously to the accessory lobe of Reptantia. The lack of a hemiellipsoid body in M. halope and S. lepidops implies that the terminal medulla takes over the role of a second order olfactory center completely. Recent descriptions of a hemiellipsoid body in Isopoda on the basis of different methods [32,65] imply, in our view, that the lack of a hemiellipsoid body in other mancoids (M. halope, S. lepidops, Cumacea, Tanaidacea), and Amphipoda, has to be explained by several independent steps of reduction. Our finding of a protocerebral split in the olfactory globular tract of M. halope is in line with this explanation. Distinct mechanosensory centers are not discernible.
The phylogenetic implications of our data are weak. If MST form a monophylum [7,8], the loss of the lamina and medulla could be interpreted as an apomorphy of this taxon. If alternatively Thermosbaenacea are a sister group to all (other) Peracarida (e.g., [1]), this loss of optic neuropils would require more transformational steps. The independent loss of optic neuropils in other peracarid taxa with reduced or lost eyes (Tanaidacea, Cumacea) raises doubt in the phylogenetic value of this feature. Convincing apomorphies of either a monophyletic MST, or of Mictocarididae + Spelaeogriphacea, have not been found.

Methods
Collection data of the studied taxa One representative species was chosen from each of the three taxa MST, respectively. The specimens of Mictocaris  [57] (Thermosbaenacea) were collected in Monte Argentario, Italy, by Carsten Wolff, Stefan Richter, and Christian Wirkner.

Histological sections
Several histological semi-thin section series were carried out for each species. Therefore, the head was first cut off the animal and fixed in Bouin's fixative. It was then dehydrated in ethanol and, after an intermediate step of epoxypropane, embedded in araldite epoxy resin under vacuum. Serial semi-thin sections (500 nm or 1 μm) were made with a Leica Ultracut UCT microtome using diamond knives in horizontal and transverse plain, respectively, and for M. halope additionally in sagittal plain. The sections were stained with a mixture of 1% azure II and 1% methylene blue in aqueous 1% borax solution for approximately 5-25 s at 80-90°C.

3D-modeling
For each species, one of the semi-thin section series was further processed for 3D-reconstruction. Histological sections were digitized with a digital camera (PixaLinkPL A622C for M. halope and Zeiss AxioCam ICc 3 for the other species) mounted on a light microscope (Zeiss Axio Scope). Sections were digitized in lower magnification yielding an overall image of the whole brain in relation to other organ systems, and in higher magnification yielding a more detailed image of its substructures. The digitized sections were aligned and combined to a 3D virtual stack using the software AutoAligner by Bitplane. All 3D-reconstructions were performed using the software Imaris versions 4.0.5 through 6.0.2 by Bitplane. Therefore, the contours of an investigated structure were marked with polygons on each digitized section, manually. On the basis of the resulting polygon scaffold, a 3D-model was created by surface rendering. 3D-models were integrated into PDF files using the Deep Exploration 5 software (Right Hemisphere, San Ramon, CA). All figure plates were created and labeled using Corel Draw X3 software. The bitmap images were edited using Corel PhotoPaint X3. Both programs are included in the Corel Graphics Suite X3 software package by Corel.

Immunocytochemistry
Individuals of Mictocaris halope were fixed in 4% paraformaldehyde dissolved in phosphate-buffered saline (PBS, 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.4) directly after collection. As adults from Mictocaris halope are only about 3 mm in size, dissection of the nervous system is quite difficult, especially under field conditions. In order to manage the balancing act between a complete preservation of nervous system and well-fixed tissue, we treated the specimens in two ways: two specimens were fixed as a whole without any dissection. In three individuals, the head region together with some trunk segments was cut off and both parts were fixed. After fixation, animals were transferred to PBS with 0.5% sodium azide and stored at 4°C until use.
For vibratome sections, the tissue was covered for a short period in Poly-L-Lysin in order to achieve better connection of tissue and embedding medium. After removing the Poly-L-Lysin, the tissue was embedded in 7% low melting point agarose (Roth) dissolved in aqua dest. at approximately 35°C. After cooling to room temperature, the trimmed blocks were sectioned horizontally into 50 μm thin sections with a Leica VT 1000 S vibratome.
All immunocytochemical steps were performed on a shaker with smooth agitation at room temperature if not otherwise stated. After sectioning, slices were permeabilized for 45 min in 0.3% Saponin in PBS containing 0.3% Triton X-100 (PBS-TX 0.3%). Then, the tissue was washed three times in PBS-TX 0.3%, followed by a blocking step in 5% normal goat serum in PBS-TX 0.3% for 3 h or overnight (4°C). Subsequently, the slices were incubated in the primary antibody mouse anti-acetylated α-tubulin (Sigma, cat. no. T6793, lot no. 059 K4823, clone 6-11B-1) diluted 1:2000 in blocking solution overnight at 4°C. After three washes with PBS-TX 0.3% for 15 min each, the tissue was incubated in the secondary antibody goat anti-mouse Alexa Fluor 488-conjugated (Molecular Probes), diluted 1:250 in blocking solution plus 4' ,6-diamidino-2-phenylindole-dihydrochloride (DAPI, 1 μg/ml) for counterstaining the nuclei. Then, the tissue was rinsed twice in PBS-TX 0.3% and once in PBS. The slices were mounted on adhesive glass slides in Mowiol (Roth).

Confocal microscopy and image processing
The physical sections of 50 μm were viewed with a Leica TCS SP5 confocal laser-scanning microscope using Leica LAS AF software. Optical sections with 0.5 μm thickness were taken from the physical slices. These z-series were processed with NIH ImageJ, v. 1.46r (Rasband WS, ImageJ, U.S. National Institutes of Health, Bethesda, MD, http:// imagej.nih.gov/ij/), producing depth coded images and merging channels. The quality was enhanced by adjusting brightness and contrast if necessary and photographs were arranged using Adobe Photoshop 6.0 (San Jose, CA).