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Table 2 Top 50 upregulated circRNAs between NC and CCI rats

From: Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

cicName

Gene symbol

NC

CCI

Log2FoldChange

p value

q value

rat_circ:chr20:37502198–37560959

*

0.25141465

0.003650046

−6.106010103

2.79E−06

5.89E−05

rat_circ:chr7:122834692–122847608

*

0.204582507

0.003650046

−5.808624181

2.64E−05

0.000446745

rat_circ:chr17:50249626–50337400

Sugct

0.182251081

0.003650046

−5.64186876

5.58E−05

0.000866751

rat_circ:chr13:73219583–73265813

Acbd6

0.253446174

0.006087826

−5.379608357

1.32E−06

2.90E−05

rat_circ:chr6:22033342–22038870

Birc6

0.312559274

0.010950139

−4.835108693

8.66E−07

1.97E−05

rat_circ:chr1:215905137–215969554

*

0.350828827

0.012965272

−4.75804289

1.03E−07

2.74E−06

rat_circ:chr17:88963985–88988986

*

4.424488235

0.165307221

−4.742288941

9.11E−79

7.20E−77

rat_circ:chr7:28987514–28992637

*

0.803220892

0.038895817

−4.368109888

6.07E−15

3.56E−13

rat_circ:chr1:127881908–127887913

*

4.246945296

0.216117837

−4.296535473

4.49E−76

3.52E−74

rat_circ:chr1:278580846–278661960

*

1.4349856

0.08427427

−4.089800231

9.09E−25

6.83E−23

rat_circ:chr9:96866448–96884476

Agap1

0.458079355

0.029200371

−3.971538929

3.21E−09

1.08E−07

rat_circ:chr2:62377060–62381205

Golph3

0.251031197

0.018263479

−3.78083314

4.36E−05

0.000704709

rat_circ:chr2:49155620–49170023

*

0.305883775

0.022689226

−3.752904254

1.16E−05

0.000216142

rat_circ:chr13:41898165–41907307

Slc35f5

0.235117703

0.018250232

−3.687396458

1.45E−05

0.00026254

rat_circ:chr17:83502435–83539887

Plxdc2

0.340234629

0.027974186

−3.60436192

3.03E−06

6.33E−05

rat_circ:chr3:94396940–94398038

Hipk3

8.278396821

0.689858769

−3.584978462

3.20E−128

2.59E−126

rat_circ:chr18:32047892–32072938

Arhgap26

0.313075666

0.026103817

−3.584178679

5.92E−06

0.00011622

rat_circ:chr8:23508992–23524947

*

0.274652757

0.029989319

−3.195088096

2.25E−05

0.000387717

rat_circ:chr3:105034310–105085171

*

0.416932296

0.046843127

−3.153903834

7.47E−07

1.72E−05

rat_circ:chr5:58792581–58794404

*

0.523492426

0.060415875

−3.115169064

1.59E−08

4.86E−07

rat_circ:chr5:58467569–58467992

*

1.120383943

0.130229146

−3.104868945

1.07E−16

7.51E−15

rat_circ:chr18:2005294–2047808

Mib1

0.283710612

0.033185498

−3.095795292

4.36E−05

0.000704709

rat_circ:chr9:71954951–71960153

*

0.515480068

0.062050789

−3.054395189

5.79E−08

1.61E−06

rat_circ:chr4:132075419–132113888

Eif4e3

0.350888356

0.044142726

−2.990764449

4.13E−06

8.36E−05

rat_circ:chr2:206534104–206536360

Magi3

0.394038281

0.051861089

−2.925611391

1.41E−06

3.06E−05

rat_circ:chr4:89131241–89138920

Herc3

0.531876619

0.079141743

−2.748580873

8.28E−08

2.25E−06

rat_circ:chr2:207119352–207127766

Slc16a1

0.351063693

0.054750696

−2.680783591

3.12E−05

0.000517084

rat_circ:chr20:14618775–14619985

Gnaz

0.982857873

0.167902134

−2.54936224

8.39E−13

3.99E−11

rat_circ:chr11:89175425–89180448

Spidr

3.926288808

0.687932197

−2.512828014

4.79E−44

3.71E−42

rat_circ:chr17:34787652–34799549

Exoc2

0.432093695

0.075805009

−2.510979092

9.81E−06

0.000186663

rat_circ:chr6:57016029–57048318

Agmo

0.595587198

0.107379529

−2.471593757

1.66E−07

4.32E−06

rat_circ:chr18:79813606–79815529

Zfp516

0.60811866

0.113151438

−2.426097934

5.17E−08

1.44E−06

rat_circ:chr3:101926186–101954565

*

0.39540261

0.075194562

−2.394622161

5.47E−05

0.000857167

rat_circ:chr10:6991635–6992636

Usp7

0.360561779

0.068704837

−2.391762898

3.19E−05

0.000527475

rat_circ:chr6:30213961–30219724

*

0.39272531

0.075423859

−2.380427707

5.47E−05

0.000857167

rat_circ:chr4:2546232–2564215

*

0.396666041

0.083245965

−2.252472648

3.10E−05

0.00051578

rat_circ:chr14:85057352–85061960

Nf2

2.033181317

0.433870486

−2.228402524

6.13E−21

4.47E−19

rat_circ:chr14:39730079–39755962

Gabra2

0.646023427

0.138812971

−2.218444102

1.58E−07

4.11E−06

rat_circ:chr9:92380210–92405119

Trip12

0.399681023

0.086691517

−2.204886337

5.47E−05

0.000857167

rat_circ:chr11:24479964–24498116

App

1.540401399

0.348960903

−2.142169025

4.12E−15

2.49E−13

rat_circ:chr10:72203091–72212356

Myo19

0.880382639

0.205470222

−2.099201373

1.80E−08

5.47E−07

rat_circ:chr1:220039308–220042767

Rbm4

0.760440921

0.182218718

−2.061165006

1.10E−07

2.94E−06

rat_circ:chr18:24611733–24614740

Wdr33

0.454872734

0.11004188

−2.047410267

1.53E−05

0.000274117

rat_circ:chr10:94758719–94760369

*

0.708886324

0.188218263

−1.913147675

8.76E−07

1.99E−05

rat_circ:chr20:50725400–50764570

Hace1

0.639217189

0.171416942

−1.898796495

4.67E−06

9.39E−05

rat_circ:chr3:157028112–157040380

Chd6

0.521580243

0.142758265

−1.869314953

1.21E−05

0.000224614

rat_circ:chr18:13352206–13417002

*

0.85873703

0.23861058

−1.847558389

1.72E−07

4.43E−06

rat_circ:chrX:159765411–159801803

Arhgef6

0.560013063

0.161390973

−1.794900589

4.07E−05

0.000661291

rat_circ:chr19:25886356–25886887

Nfix

16.23637991

4.685799745

−1.792862798

3.39E−116

2.71E−114

rat_circ:chr16:2158111–2179241

Slmap

0.859120326

0.269488853

−1.672634608

5.16E−07

1.22E−05

  1. Following differential expression analysis, 374 DEcircRNAs were identified between the CCI and NC groups (4 mice per group) by using FC filtering (FC ≥ 2 or ≤ 0.5) and FDR (Q < 0.001). The 50 down-regulated DEcircRNAs were listed