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Table 1 Top 50 upregulated circRNAs between NC and CCI rats

From: Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

cicName

Gene symbol

NC

CCI

Log2FoldChange

p value

q value

rat_circ:chr13:14728984–14734632

*

0.006613447

0.239134343

5.176275102

1.04E−05

0.000197339

rat_circ:chr8:122024123–122051181

*

0.026453788

0.327144217

3.628380535

1.08E−05

0.000204393

rat_circ:chr17:5142807–5148631

*

0.102932557

1.020292962

3.309212177

3.53E−14

1.92E-12

rat_circ:chr3:16676098–16677678

*

0.038958884

0.357541925

3.198088158

1.75E−05

0.000311119

rat_circ:chr10:83601126–83611053

*

0.048021776

0.409332141

3.091511283

5.04E−06

0.000100524

rat_circ:chr4:133073964–133096725

Shq1

0.079302196

0.557523925

2.813600993

4.06E−07

9.77E−06

rat_circ:chr6:12442152–12468485

Gtf2a1l

0.158363447

1.090678555

2.783914689

4.89E−13

2.40E−11

rat_circ:chr2:3165816–3262689

*

0.269462862

1.688134016

2.647271084

2.22E−16

1.41E−14

rat_circ:chr4:127707965–127709016

Suclg2

0.07789907

0.475982505

2.611230542

8.46E−06

0.000162135

rat_circ:chr1:207212800–207228383

Dock1

0.250908366

1.490557854

2.570619891

1.11E−15

6.95E−14

rat_circ:chr12:628708–632694

N4bp2l2

0.331660809

1.909515799

2.525426408

2.22E−16

1.41E−14

rat_circ:chr9:98293254–98296809

*

0.075039684

0.426190004

2.505771094

1.13E−05

0.000211892

rat_circ:chr6:103783216–103876906

*

0.095921747

0.536135335

2.482667387

1.41E−06

3.06E−05

rat_circ:chr9:21359002–21381023

*

0.351886506

1.877364693

2.415526836

2.22E−16

1.41E−14

rat_circ:chr13:42464681–42484505

*

0.461623763

2.428772129

2.395437745

2.22E−16

1.41E−14

rat_circ:chr17:31092766–31111405

*

0.397313897

2.017431411

2.344168464

2.22E−16

1.41E−14

rat_circ:chr18:15167501–15177828

Mapre2

0.163508464

0.825898788

2.33659967

9.67E−09

3.04E−07

rat_circ:chr1:115688753–115690048

*

0.084999051

0.422172726

2.312314733

6.00E−05

0.000921612

rat_circ:chr1:132003515–132012253

*

0.122526404

0.60044185

2.292931859

1.19E−06

2.64E−05

rat_circ:chr10:51399085–51420055

*

0.265527228

1.296441867

2.287625806

8.00E−13

3.83E−11

rat_circ:chr10:51724607–51734014

Myocd

0.158230338

0.739399801

2.224328417

2.55E−07

6.38E−06

rat_circ:chr18:13870389–13923877

Nol4

0.311141127

1.410542522

2.18060915

4.60E−13

2.27E−11

rat_circ:chr15:16089766–16170268

Fhit

0.174858821

0.791604402

2.178589054

1.11E−07

2.95E−06

rat_circ:chr10:32437291–32442282

Sgcd

0.118076637

0.53278429

2.173828

1.13E−05

0.000211892

rat_circ:chr4:129756394–129778825

*

0.173758692

0.772875498

2.153150883

1.75E−07

4.49E−06

rat_circ:chr14:94275506–94356512

*

2.000034951

8.784498579

2.134934728

0

0

rat_circ:chr10:77840596–77845575

*

0.184956873

0.804092283

2.120172172

1.87E−07

4.73E−06

rat_circ:chr3:63039411–63058267

Pde11a

0.396002984

1.710669556

2.110977899

5.55E−15

3.28E−13

rat_circ:chr7:64050812–64065194

Srgap1

0.318355006

1.35773337

2.092491836

1.96E−11

8.20E−10

rat_circ:chr17:56931036–56944178

*

0.441633884

1.843422885

2.061464294

1.78E−15

1.09E−13

rat_circ:chr8:63507502–63540694

Rec114

0.341030078

1.408824831

2.046521349

8.62E−12

3.74E−10

rat_circ:chr11:59110328–59200801

Lsamp

1.853392371

7.635218572

2.042501119

0

0

rat_circ:chr12:1509719–1512175

Rn5s

3.310525114

13.62707285

2.041343719

0

0

rat_circ:chr2:84361142–84373051

Ankrd33b

0.281535995

1.155090346

2.036614408

3.41E−10

1.28E−08

rat_circ:chr5:39149632–39157890

*

0.252422652

1.033033146

2.032973259

4.32E−09

1.41E−07

rat_circ:chr7:103024404–103123226

*

2.133991155

8.708894234

2.028935355

0

0

rat_circ:chr5:103284367–103352641

Cntln

0.135431589

0.551848363

2.026707619

2.05E−05

0.000354737

rat_circ:chr2:39818337–39845931

*

0.769099545

3.108829149

2.01512909

0

0

rat_circ:chr3:55157605–55224851

*

1.500202608

6.047257552

2.011123669

0

0

rat_circ:chr5:49097739–49187150

*

1.842693006

7.359085633

1.997710785

0

0

rat_circ:chr3:176137456–176143033

*

0.217785593

0.869089421

1.996596103

8.13E−08

2.22E−06

rat_circ:chr5:106553499–106632351

*

1.36441395

5.442020732

1.995861042

0

0

rat_circ:chr16:23448552–23492639

*

1.331199157

5.293003424

1.991360163

0

0

rat_circ:chr4:108913081–108982246

Ctnna2

1.818672104

7.064297787

1.957660702

0

0

rat_circ:chr1:25216049–25284394

Clvs2

1.338072701

5.168828573

1.949680852

0

0

rat_circ:chr8:13085939–13095295

*

0.20772817

0.799366276

1.944159836

7.24E−07

1.68E−05

rat_circ:chr8:110645275–110656857

Ephb1

0.470472499

1.808594153

1.942686405

2.98E−14

1.63E−12

rat_circ:chr7:135919861–135967388

Tmem117

1.354011654

5.136609176

1.923576153

0

0

rat_circ:chr8:130762665–130768360

Snrk

0.921667931

3.483545605

1.918237491

0

0

rat_circ:chr17:29311092–29354416

Fars2

0.834086166

3.147143806

1.915774767

0

0

  1. Following differential expression analysis, 374 DEcircRNAs were identified between the CCI and NC groups (4 mice per group) by using FC filtering (FC ≥ 2 or ≤ 0.5) and FDR (Q < 0.001). The 50 up-regulated DEcircRNAs were listed