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Table 1 Oligonucleotide primer sequences used for qRT-PCR

From: Effect of acute noise trauma on the gene expression profile of the hippocampus

Gene

Primer sequence (forward)

Primer sequence (reverse)

Annealing temperature (°C)

Product size (bp)

NFKBIA

GAA AAT CTT CAG ACG CTG CCC

AGG GCA ACT CAT CTT CCG TG

60

81

EGR1

TCG CTC GGA TGA GCT TAC AC

CAA AAG GCT TCT CGC CTG TG

60

139

MT1M

CCA ACT GCT CCT GTG CCA

GCA GCT TTT CTT GCA GGA GG

60

91

DUSP1

GGG CAC CTC TAC TAC AAC GG

CTC GGA GAG GTT GTG ATG GG

60

104

MT1A

CCC AAC TGC TCC TGC TCC

ATT TGC AGT TCT TGC AGC CG

60

69

FOS

TAT TTT GGC AGC CCA CCG A

GCA GAC CCC CAG TCA AGT C

60

97

MT2A

CTG GCT CCT GCA AAT GCA AA

CAG ATG CAG CCC TGG GAG

60

102

SLPI

GTT CCC ATT CGT GGA CCA GT

CCC ACA CAT ACC CTC ACA ACA

60

140

PER1

CTG TGG GGG CCA AGA AAG AT

GGC TCC TTC CGA GGA GTT G

60

69

COLEC10

GAA ACC AGT TCA TCC TGC TGC

AGC AGA GCG ACC ATC AAC AT

60

76

SYT9

AAC TCT CGT GGT TAC CGC C

CCA GCA CAG TTT CCA AGA CAC

60

72

SLITRK6

CGG CTG GTA CCC TTT TGA GT

CGC GGC GCA GAA TAC AAT AG

60

100

KCNJ16

GGC GGC GTT TTT ATT CTC CC

TTC TTC CGT GAC ACA ACG GT

60

69

SLC5A7

ATC TAT GGA AAG CGC ATG GGT

TAC GCT GAT GGT AGC CCC TA

60

104

CHRNA3

TGT TCC AGT ACC TGT TCG AAG ATT

AGC CAC AGG TTG GTT TCC AT

60

147

SLC4A5

TAG AGG GTG GAC TTC TGC GA

AAT GTC TGC AAG GGA ACG GT

60

109

SLC40A1

GCA GCT GAC CTC ACC TAA AGA

AGG CAC AGG TGG GTT CTT G

60

115

SLC5A3

ACC TCC CAC GAA GGA TCA GA

AGA GCA ACT CTC CTT CGT CAC

60

76

IGF2

ATC TCT TTG GCC TTC GCC TT

CAG ACA AAC TGA AGC GTG TCA A

60

94

KL

GAC GGC ATC AAC CTT TGT GG

AAA AGC CGG ACT TGG GAA CT

60

69

  1. NFKBIA: nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha; EGR1: early growth response 1; MT1M: metallothionein 1 M; DUSP1: dual specificity phosphatase 1; MT1A: metallothionein 1a; FOS: FBJ osteosarcoma oncogene; MT2A: metallothionein 2A; SLPI: secretory leukocyte peptidase inhibitor; PER1: period circadian clock 1; COLEC10: collectin subfamily member 10 (C-type lectin); SYT9: synaptotagmin IX; SLITRK6: SLIT and NTRK-like family, member 6; KCNJ16: potassium channel, inwardly rectifying subfamily J, member 16; SLC5A7: solute carrier family 5 (sodium/choline cotransporter), member 7; CHRNA3: cholinergic receptor, nicotinic, alpha 3; SLC4A5: solute carrier family 4, sodium bicarbonate cotransporter, member 5; SLC40A1: solute carrier family 40 (iron-regulated transporter), member 1; SLC5A3: solute carrier family 5 (sodium/myo-inositol cotransporter), member 3; IGF2: insulin-like growth factor 2; KL: Klotho