BMC Neuroscience

Table 2 Analysis of cell types via marker genes

From: T cell deficiency in spinal cord injury: altered locomotor recovery and whole-genome transcriptional analysis

System	Cell type	Marker	Acute			Chronic
System	Cell type	Marker	Greater	log₂FC	Q	Greater	log₂FC	Q
Innate immune system	Dendritic cell	CD83		0.14	0.77		−0.02	0.98
	Macrophage	CD68		0.66	0.12		0.47	0.07
	M1 macrophage	CD86		0.50	0.16		−0.18	0.68
	M2 macrophage	CMAF		0.46	0.12		0.32	0.18
	Mast cell	KIT		−0.05	0.95	AN	0.57	0.01
	Granulocyte	Ly6C		0.19	0.91		0.26	0.87
	NK cell	KLRA1		0.63	0.15	AN	1.20	<0.01
Adaptive immune system	T cell	CD3g	SD	−2.37	0.02		−0.88	0.17
	Helper T cell	CD4	SD	−1.20	<0.01		−0.25	0.36
	T_h1 cell	CCR5		−0.12	0.83		−0.14	0.72
	T_h2 cell	CXCR4	AN	0.65	0.02	AN	0.49	0.01
	Cytotoxic T cell	CD8a	AN	1.39	<0.01		−0.37	0.16
	B cell	CD19		−1.29	1.00		0.74	1.00
Central nervous system	Neuron	NEFH		−3.31	0.05	SD	−1.90	<0.01
	Oligodendrocyte	PLP		−1.27	0.30		−0.21	0.82
	Astrocyte	GFAP		−1.48	0.34		0.00	1.00

FC fold change (AN FKPM divided by SD FKPM); Q, false discovery rate-adjusted P value

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