Table 1 Read mapping from RNA-seq output
Phase | Strain | Animal | Total reads | Mapped reads | % Mapped | Genes |
|---|---|---|---|---|---|---|
Acute | AN | 714 | 51,634,511 | 50,136,688 | 97.1 | 13,574 |
715 | 44,269,036 | 43,001,258 | 97.1 | 13,471 | ||
717 | 44,842,419 | 43,542,173 | 97.1 | 13,559 | ||
SD | 618 | 48,194,423 | 46,090,448 | 95.6 | 14,035 | |
619 | 39,885,927 | 38,511,046 | 96.6 | 13,610 | ||
620 | 45,447,598 | 43,769,395 | 96.3 | 13,745 | ||
Chronic | AN | 707 | 44,446,497 | 42,956,572 | 96.6 | 13,763 |
712 | 45,858,389 | 44,358,919 | 96.7 | 13,653 | ||
713 | 43,186,929 | 41,819,751 | 96.8 | 13,632 | ||
SD | 605 | 49,095,638 | 47,230,803 | 96.2 | 13,861 | |
606 | 45,671,290 | 43,873,662 | 96.1 | 13,849 | ||
608 | 45,194,438 | 43,242,894 | 95.7 | 13,926 |