|
Saline
|
METH
|
---|
Total clean reads | 49621072 (100%) | 50330816 (100%) |
Total mapped reads | 41689728 (84.02%) | 40675732 (80.82%) |
Perfect matcha
| 28650476 (57.74%) | 27082591 (53.81%) |
≤5 bp mismatchb
| 13039252 (26.28%) | 13593141 (27.01%) |
Unique matchc
| 36764592 (74.09%) | 33138073 (65.84%) |
Multi-position matchd
| 4925136 (9.93%) | 7537659 (14.98%) |
Total unmapped readse
| 7931344 (15.98%) | 9655084 (19.18%) |
-
aindicates clean reads that aligned without mismatch in the total mapped reads.
-
bindicates clean reads that aligned with fewer than 5Â bp mismatches in the total mapped reads.
-
crepresents the mapped reads that aligned to only one position in the mouse genome.
-
drepresents the mapped reads that aligned to more than one positions in the mouse genome.
-
eindicates reads that did not match to the mouse genome.