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Table 1 Genes at post natal day 10 showing fold change values of ≥2 between Nf1+/- and wild type mice (p ≤ 0.05).

From: Cognitive dysfunction in NFI knock-out mice may result from altered vesicular trafficking of APP/DRD3 complex

Probe Set

Unigene

Fold Change

P Value

Gene Name

Gene Symbol

1421984_at

Mm.20911

12.2

0.00205

stanniocalcin 1

Stc1

1422207_at

Mm.4835

9.391

0.000624

5-hydroxytryptamine (serotonin) receptor 5A

Htr5a

1426141_at

Mm.207059

7.518

0.0351

RF-amide G protein-coupled receptor

MrgA1

1445983_at

Mm.172835

6.707

0.0139

ubiquitin-conjugating enzyme E2A, RAD6 homolog

Ube2a

1436615_a_at

Mm.2611

6.396

0.0416

ornithine transcarbamylase

Otc

1457713_at

Mm.2213

6.388

0.0281

excision repair cross-complementing rodent repair deficiency

Ercc5

1459730_at

Mm.52297

5.653

0.0329

formin binding protein 1

Fnbp1

1446315_at

Mm.282039

5.376

0.0362

ATP citrate lyase

Acly

1430486_at

Mm.341756

4.883

0.0493

RAD51-like 1 (S. cerevisiae)

Rad51l1

1425443_at

Mm.244858

4.441

0.0239

transcription factor AP-2, delta

Tcfap2d

1452431_s_at

Mm.235338

4.175

0.0242

histocompatibility 2, class II antigen A, alpha

H2-Aa

1433133_at

Mm.159671

3.708

0.0269

EDAR (ectodysplasin-A receptor)-associated death domain

Edaradd

1429566_a_at

Mm.23790

3.69

0.0369

homeodomain interacting protein kinase 2

Hipk2

1426005_at

Mm.199008

3.673

0.00896

dentin matrix protein 1

Dmp1

1429668_at

Mm.246550

3.67

0.0389

POU domain, class 4, transcription factor 1

Pou4f1

1415861_at

Mm.30438

3.651

0.0382

tyrosinase-related protein 1

Tyrp1

1427313_at

Mm.287572

3.557

0.0125

prostaglandin I receptor (IP)

Ptgir

1435663_at

Mm.9213

3.449

0.00753

estrogen receptor 1 (alpha)

Esr1

1441957_x_at

Mm.205196

3.211

0.0202

stromal cell derived factor receptor 1

Sdfr1

1422038_a_at

Mm.261384

3.19

0.0384

tumor necrosis factor receptor superfamily, member 22

Tnfrsf22

1421967_at

Mm.200886

3.031

0.0318

UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5

B4galt5

1419085_at

Mm.41456

2.949

0.0459

Purkinje cell protein 2 (L7)

Pcp2

1456151_at

Mm.299073

2.931

0.0198

zinc finger protein 358

Zfp358

1449484_at

Mm.32506

2.929

0.00956

stanniocalcin 2

Stc2

1436490_x_at

Mm.297440

2.888

0.0446

RAN, member RAS oncogene family

Ran

1447786_at

Mm.86413

2.684

0.0443

pleckstrin homology, Sec7 and coiled-coil domains 1

Pscd1

1457684_at

Mm.277465

2.683

0.0331

heat shock protein 12B

Hspa12b

1437571_at

Mm.261602

2.572

0.023

hypermethylated in cancer 2

Hic2

1427637_a_at

Mm.89935

2.516

0.048

desmocollin 3

Dsc3

1421275_s_at

Mm.354761

2.438

0.00644

suppressor of cytokine signaling 7

Socs7

1444641_at

Mm.71996

2.351

0.0412

adenylate cyclase 3

Adcy3

1459828_at

Mm.1963

2.326

0.00118

serine/arginine repetitive matrix 1

Srrm1

1421660_at

Mm.314531

2.323

0.026

sodium channel, voltage-gated, type IX, alpha polypeptide

Scn9a

1445314_at

Mm.4866

2.302

0.000693

ets variant gene 1

Etv1

1421234_at

Mm.332607

2.248

0.0373

transcription factor 1

Tcf1

1442456_at

Mm.172679

2.215

0.0262

spermatogenesis associated 5

Spata5

1441483_at

Mm.336081

2.153

0.0398

SLIT and NTRK-like family, member 2

Slitrk2

1438597_x_at

Mm.196508

2.137

0.0365

mortality factor 4 like 1

Morf4l1

1439428_x_at

Mm.247143

2.118

0.0407

GDP-mannose 4, 6-dehydratase

Gmds

1459924_at

Mm.340818

2.088

0.0306

ATPase, H+ transporting, lysosomal V0 subunit a isoform 1

Atp6v0a1

1425429_s_at

Mm.354757

2.003

0.048

hypoxia inducible factor 3, alpha subunit

Hif3a

1427040_at

Mm.1314

0.499

0.0418

kidney cell line derived transcript 1

Kdt1

1418745_at

Mm.139817

0.498

0.0139

osteomodulin

Omd

1419230_at

Mm.342959

0.49

0.00148

keratin complex 1, acidic, gene 12

Krt1-12

1423170_at

Mm.236009

0.487

0.000269

TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor

Taf7

1419231_s_at

Mm.342959

0.487

0.00492

keratin complex 1, acidic, gene 12

Krt1-12

1457306_at

Mm.6988

0.483

0.0387

aminolevulinate, delta-, dehydratase

Alad

1432834_at

Mm.24242

0.475

0.00679

carboxypeptidase B2 (plasma)

Cpb2

1449739_at

Mm.281464

0.472

0.0126

phosphatidylserine synthase 1

Ptdss1

1460250_at

Mm.43375

0.466

0.00542

sclerostin domain containing 1

Sostdc1

1425291_at

Mm.4985

0.466

0.00137

forkhead box J1

Foxj1

1442344_at

Mm.82680

0.465

0.00971

AP1 gamma subunit binding protein 1

Ap1gbp1

1456247_x_at

Mm.18565

0.462

0.0237

LIM domain only 6

Lmo6

1450760_a_at

Mm.39999

0.462

0.0157

inhibitor of growth family, member 3

Ing3

1418082_at

Mm.10265

0.456

0.0305

N-myristoyltransferase 1

Nmt1

1427612_at

Mm.171224

0.444

0.00697

defensin beta 9

Defb9

1439051_a_at

Mm.260504

0.442

0.0497

MAP/microtubule affinity-regulating kinase 4

Mark4

1421906_at

Mm.12926

0.427

0.0224

peroxisome proliferator activated receptor binding protein

Pparbp

1416203_at

Mm.18625

0.427

0.0261

aquaporin 1

Aqp1

1444960_at

Mm.243855

0.412

0.031

cytochrome P450, family 2, subfamily u, polypeptide 1

Cyp2u1

1424273_at

Mm.29119

0.402

0.00623

cytochrome P450, family 2, subfamily c, polypeptide 70

Cyp2c70

1450995_at

Mm.2135

0.37

0.0443

folate receptor 1 (adult)

Folr1

1418554_at

Mm.2857

0.366

0.0107

adrenomedullin receptor

Admr

1424713_at

Mm.28623

0.36

0.0295

calmodulin-like 4

Calml4

1454866_s_at

Mm.44747

0.357

0.00964

chloride intracellular channel 6

Clic6

1449693_at

Mm.258589

0.353

0.0446

mitogen activated protein kinase kinase kinase 7

Map3k7

1452546_x_at

Mm.221026

0.337

0.0323

defensin beta 11

Defb11

1419662_at

Mm.4258

0.332

0.0234

osteoglycin

Ogn

1417297_at

Mm.328900

0.294

0.0313

inositol 1,4,5-triphosphate receptor 3

Itpr3

1436477_x_at

Mm.240224

0.288

0.0103

RAB2, member RAS oncogene family

Rab2

1459738_x_at

Mm.1114

0.286

0.0425

galactosidase, alpha

Gla

1439167_at

Mm.281738

0.284

0.0116

peroxisomal trans-2-enoyl-CoA reductase

Pecr

1420652_at

Mm.216321

0.27

0.0445

arginine-tRNA-protein transferase 1

Ate1

1427560_at

Mm.3410

0.259

0.0328

sine oculis-related homeobox 5 homolog (Drosophila)

Six5

1435214_at

Mm.40016

0.241

0.00726

gap junction membrane channel protein alpha 12

Gja12

1425794_at

Mm.209931

0.236

0.0234

polymerase (DNA directed), alpha 2

Pola2

1426151_a_at

Mm.272264

0.235

0.0214

syntaxin 3

Stx3

1439878_at

Mm.207365

0.208

0.0151

involucrin

Ivl

1450805_at

Mm.338890

0.202

0.0179

sarcoglycan, delta (dystrophin-associated glycoprotein)

Sgcd

1438406_at

Mm.194950

0.195

0.00559

scavenger receptor class F, member 2

Scarf2

1439457_x_at

Mm.9852

0.189

0.0278

autophagy 12-like (S. cerevisiae)

Apg12l

1444680_at

Mm.208970

0.171

0.0137

positive cofactor 2, multiprotein complex, glutamine/Q-rich-associated protein

Pcqap

1426171_x_at

Mm.193478

0.17

0.0166

killer cell lectin-like receptor, subfamily A, member 7

Klra7

1418618_at

Mm.2657

0.0828

6.20E-05

engrailed 1

En1