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Table 2 Genes differentially expressed in the neurosphere vs. differentiated cells comparison (F-G).

From: Transcriptome analysis in primary neural stem cells using a tag cDNA amplification method

Genbank Acc.no.

Unigene ClusterID

GeneID

Gene Name

M

B

CX240827

Mm.200608

12759

Clusterin

-3,503

22,292

CX241145

Mm.289645

17263

GTL2, imprinted maternally expressed untranslated mRNA

-3,774

21,684

CX238761

Mm.354720

14681

Guanine nucleotide binding protein, alpha o

-3,112

21,128

CX241318

Mm.289645

17263

GTL2, imprinted maternally expressed untranslated mRNA

-4,429

18,116

CX235874

Mm.40461

17433

Myelin-associated oligodendrocytic basic protein

-2,961

18,854

CX236810

Mm.210815

20411

Sorbin and SH3 domain containing 1

-2,287

17,999

CX241478

Mm.25874

77976

RIKEN cDNA B230104P22 gene

-3,435

17,660

CX241468

Mm.4543

13390

Distal-less homeobox 1

-2,843

16,192

CX240901

Mm.271178

67166

ADP-ribosylation factor-like 10C

-2,606

15,924

CX238347

Mm.252063

17196

Myelin basic protein

-2,622

15,450

CX240173

Mm.291442

20692

Secreted acidic cysteine rich glycoprotein

-2,008

14,973

CX240709

Mm.30035

107747

Formyltetrahydrofolate dehydrogenase

2,065

14,714

CX238313

Mm.206505

21858

Tissue inhibitor of metalloproteinase 2

-2,669

14,533

CX236462

Mm.34126

74617

Serine carboxypeptidase 1

-2,544

13,912

CX242347

Mm.271770

433496

Similar to Myl9 protein

-2,860

13,549

CX243886

Mm.289645

17263

GTL2, imprinted maternally expressed untranslated mRNA

-2,213

13,547

CX235484

Mm.178246

216848

Chromodomain helicase DNA binding protein 3

-2,313

12,737

CX241157

Mm.194225

70397

RIKEN cDNA 1110020A09 gene

-2,045

12,600

CX243757

Mm.260601

242521

Kelch-like 9 (Drosophila)

-2,848

12,607

CX237579

Mm.40461

17433

Myelin-associated oligodendrocytic basic protein

-2,000

11,957

CX242456

Mm.291442

20692

Secreted acidic cysteine rich glycoprotein

-2,835

11,842

CX238326

Mm.1426

51791

Regulator of G-protein signaling 14

-2,193

11,543

CX239776

Mm.252063

17196

Myelin basic protein

-2,606

11,414

CX235557

Mm.241355

17136

Myelin-associated glycoprotein

-2,220

11,257

CX239390

Mm.213204

80906

Kv channel-interacting protein 2

-2,126

10,915

CX239520

Mm.21549

80888

Heat shock 27 kDa protein 8

-2,104

10,657

CX238589

Mm.226704

14400

gamma-aminobutyric acid (GABA-A) receptor, subunit beta 1

-2,039

10,744

CX242889

Mm.29358

67971

RIKEN cDNA 2700055K07 gene

-2,032

10,827

CX235601

Mm.4857

12323

Calcium/calmodulin-dependent protein kinase II, beta

2,418

10,025

CX242440

Mm.121920

20660

Sortilin-related receptor, LDLR class A repeats-containing

-2,180

8,923

CX240196

Mm.181959

13653

Early growth response 1

2,469

8,456

CX242602

  

#N/A

-2,692

8,087

CX240394

Mm.18830

77569

RIKEN cDNA 3732412D22 gene

-2,078

7,216

CX237453

Mm.181959

13653

Early growth response 1

2,059

6,141

CX244387

Mm.211275

76441

Dishevelled associated activator of morphogenesis 2

-2,347

4,185

CX236987

Mm.329668

20743

Spectrin beta 3

-2,014

2,723

  1. Genes with p < 0.001, calculated by empirical Bayes moderated t-test and false discovery rate adjustment, and fold change ≥ 4 (-2 ≥ M ≥ 2), are included. Genes with M-value < 0 are up-regulated in differentiated cells, genes with M-value > 0 are up-regulated in neurospheres. M = log2(Cy5/Cy3), B = B-value calculated by empirical Bayes moderated t-test. Higher B-values mean higher probability for differential expression. For a full list of differentially expressed genes in the F-G comparison see additional data file 1: Differentially expressed genes in neurosphere vs. differentiated cells comparison.