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Table 1 The effect of NGF (9 days treatment) on expression levels of transcripts for various ribosomal proteins in PC12 cell cultures

From: Nerve growth factor selectively regulates expression of transcripts encoding ribosomal proteins

TAG RP ACC# #TAGS- #TAGS+ FOLD CHANGE +NGF P value
GGACCGCTCAA L3 X62166 44 27 ↓ 1.6 0.06
TTGAAGCTGAA L4/L1 X82180 49 39 ↓ 1.3 0.2
CTGCTATCCGA L5 X06148 40 28 ↓ 1.4 0.15
TACCCTCACAA L6 X87107 16 24 ↑ l.5 0.05
AGATCTATACA L7 Ml 7422 8 7 ↓ 1.1 0.5
CACCACTGTTG L7A X15013 63 47 ↓ 1.3 0.2
AATCCTGTGGA L8 P25120 119 58 2.1 0.0002
ATCAAGGGTGT L9 X51706 7 19 2.7 0.01
TTCAATAATAA L10 X87106 24 17 ↓ 1.4 0.2
GGCAAGCCCCA L10A X93352 26 30 ↑ 1.2 0.2
CGCTGGTTCCA L11 X62146 18 23 ↑ .3 0.1
ACATCATAGAT L12 R7RT12 59 15 3.9 < 0.0001
GCCCGAGCCAA L13 X78327 48 57 ↑ .2 0.1
AGGTCGGGTGG L13A X68282 87 118 1.3 0.002
AGGAGGCTACA L14 X94242 31 51 1.6 0.003
GCACGGGAATA L17 X58389 8 26 3.2 0.0007
GGTGTTGACAT L18 M20156 47 12 3.9 < 0.0001
AAGGTGGAAGA L18A JC4231 56 33 ↓ 1.7 0.03
GATCAGTCATT L19 X82202 65 63 ↓ 1.0 0.3
GCCTAATGTAT L21 M27905 43 32 1.3 0.2
TTTTGTATTAA L22 X78444 5 4 1.3 0.7
GTGATGGCCAC L23 X58200 72 63 ↓ 1.1 0.4
AAGGTCGAGCT L24 X78443 95 28 3.4 < 0.0001
CCCAGTTTTCA L26 X14671 31 19 ↓ 1.6 0.1
CCCACAAGGTA L27 X07424 16 30 ↑ 1.9 0.007
ATCCGAAAAAA L28 X52619 42 10 4.2 0.0001
GCCAAGGGTCG L29 X68283 97 40 2.4 < 0.0001
CCAGAACAGAC L30 X52619 36 9 4.0 0.0002
AAGGAGATGGG L31 X04809 64 111 1.7 < 0.0001
CTGCCTAGCGG L32 X06483 26 20 ↓ 1.3 0.2
TGCGCCAAGTG L34 X14401 27 30 ↑ 1.1 0.2
AAGAGAAGCTG L35 X51705 115 70 1.6 0.009
GTTCGTGCCAA L35A X03475 33 16 ↓ 2.1 0.04
CGGAAGGCGGC L36 X68284 38 77 2.0 < 0.0001
GATTCCGTGAA L37 X66369 58 79 1.4 0.01
AAAACAGTGGC L37A X14069 55 90 1.6 0.0003
TGACTATTAAA L38 X57007 25 21 ↓ 1.2 0.5
TCTTCTCACAA L39 X82551 15 27 ↑ 1.8 0.03
CAGATCTTCGT L40 X82636 89 32 2.8 < 0.0001
AGAGCGAAGTG L41 X82550 185 80 2.3 < 0.0001
CAAGGTGACAG S2 U92700 52 47 ↓ 1.1 0.4
CCTCAGCCAGT S3 X51536 21 35 ↑ 1.7 0.03
GTGAAGGCGGT S3A X75161 46 43 ↓ 1.1 0.4
ATGAAATCAAA S4 X14210 44 20 2.2 0.01
CCTTTGAGATC S5 X58465 72 34 2.1 0.004
GCAGAGTGCGC S6 NM_017160 63 27 2.3 0.0006
TTCAGCTCGAG S7 X53377 41 31 ↓ 1.3 0.3
CCCGTGTGCTC S9 X66370 54 32 ↓ 1.7 0.06
CAGTCTCTCAA S10 X13549 57 36 ↓ 1.6 0.02
TCTGTGCACCT S11 K03250 23 18 ↓ 1.3 0.4
TATGTCAAGCT S12 M18547 92 52 1.8 0.006
GTGTGGCACAG S13 X53378 65 65 1.0 0.2
TTGGCTGCCCA S14 X15040 99 50 2.0 0.0008
GTGGGTGTGTA S15 NM_017151 254 60 4.2 < 0.0001
AAGAGGCAAGA S15A X77953 35 48 ↑ 1.4 0.04
TGGCCCAAATT S16 X17665 155 48 3.2 < 0.0001
GGCCGCGTTCG S17 K02933 18 39 2.1 0.003
CAGAACCCACG S18 X57529 101 26 3.9 < 0.0001
ACCAAGATCTA S19 X51707 136 28 4.8 < 0.0001
CCTACCAAGAC S20 X51537 8 16 ↑ 2.0 0.07
GGTCTGGCTAG S21 X79059 0 3 ↑ 3.0 na
CCGTGGGTGAT S23 X77398 52 68 ↑ 1.3 0.03
GCCTTTATGAG S24 X52445 310 87 3.6 < 0.0001
CCGCCCAAAGA S25 X62482 90 43 2.1 0.0003
GAAAAATAAAA S26 X02414 35 16 ↓ 2.2 0.03
CACAAACGGTA S27-1 AF184893 99 46 2.2 0.0004
GGTAGCCACTT S27A X81839 33 77 2.3 < 0.0001
GAATGACCTGC S28 X59277 40 37 ↓ 1.1 0.4
CTAGTCTTTGT S29 X59051 125 123 ↓ 1.0 0.3
GTTCTCTGGCT S30 X62671 29 33 ↑ 1.2 0.3
GGATTCGGTCT P0 Z29530 40 55 ↑ 1.4 0.04
TCCAATAAAGA P1 R5RT12 96 48 2.0 0.0002
GGATTTGGCCT P2 X15098 83 84 ↑ 1.0 0.3
GGAGGTTATGC 40 KD RP D25224 83 34 2.4 < 0.0001
  1. Rat SAGE tags and the corresponding ribosomal proteins (and GenBank accession numbers) are given along with the number of times each tag was detected. For cells before and after NGF treatment, a total of 76,280 and 87,004 11 bp tags were analyzed, respectively. Tag numbers for non-treated cultures were normalized against those for NGF treated cultures. P values were calculated by Monte Carlo simulations using SAGE software. Fold changes in which P ≤ 0.01 are expressed in bold.