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Table 2 Top 25 genes in RMC based on fold change. Both MATLAB and GeneSpring analysis are represented

From: Transcriptome analysis of amoeboid and ramified microglia isolated from the corpus callosum of rat brain

 

Genes from MATLAB analysis

 

Genes from Genespring analysis

Gene Symbol

Gene Title

Fold Change

Function

Gene Symbol

Gene Title

Fold Change

Function

Mobp

myelin-associated oligodendrocyte basic protein

623.18

nervous system development

Mog

myelin oligodendrocyte glycoprotein

26.34

cell adhesion

Mog

myelin oligodendrocyte glycoprotein

39.14

cell adhesion

Slc5a11

solute carrier family 5 (sodium/glucose cotransporter), member 11

24.41

antigen processing and presentation

Mbp

myelin basic protein

21.57

myelination

Mbp

myelin basic protein

22.86

myelination

Robo3

roundabout homolog 3 (Drosophila)

17.39

neuron migration

Cyp3a9

cytochrome P450, family 3, subfamily a, polypeptide 9

19.31

sensory perception of smell

Mal

mal, T-celldifferentiation protein

16.13

intracellular protein transport

Opalin

oligodendrocytic myelin paranodal and inner loop protein

15.59

Golgi apparatus

Dnah12

dynein, axonemal, heavy polypeptide 12

12.77

microtubule-based movement

Plp1

proteolipid protein 1

12.00

glial cell differentiation

Slc5a11

solute carrier family 5 (sodium/glucose cotransporter), member 11

12.34

antigen processing and presentation

Camk2a

calcium/calmodulin- dependent protein kinase II alpha

9.59

G1/S transition of mitotic cell cycle

Hapln2

hyaluronan and proteoglycan link protein 2

9.84

cell adhesion

Lgi4

leucine-rich repeat LGI family, member 4

9.39

neuron maturation

Plp1

proteolipid protein 1

9.00

glial cell differentiation

Cpne9

copine family member IX

8.71

unknown

Ermn

ermin, ERM-like protein

8.82

morphogenesis of a branching structure

Znf76

zinc finger protein 76 (expressed in testis)

8.55

transcription

Tnnc2

troponin C type 2 (fast)

8.60

skeletal muscle contraction

Rhpn1

rhophilin, Rho GTPase binding protein 1

8.35

signal transduction

Mag

myelin-associated glycoprotein

8.12

cell adhesion

Gng13

guanine nucleotide binding protein (G protein), gamma 13

8.16

G-protein coupled receptor protein signaling pathway

Lgi4

leucine-rich repeat LGI family, member 4

8.10

neuron maturation

Mag

myelin-associated glycoprotein

7.99

cell adhesion

Extl1

exostoses (multiple)-like 1

8.09

protein binding

Herc6

hect domain and RLD 6

7.71

protein modification process

Aldh3b1

aldehyde dehydrogenase 3 family, member B1

7.81

cellular aldehyde metabolic process

Chn1

Chimerin (chimaerin) 1

6.31

signal transduction

Hhatl

hedgehog acyltransferase-like

7.79

negative regulation of N-terminal protein palmitoylation

Sept4

septin 4

5.81

cell cycle

Gng13

guanine nucleotide binding protein (G protein), gamma 13

7.44

G-protein coupled receptor protein signaling pathway

Ccdc37

coiled-coil domain containing 37

5.66

unknown

Akap8l

A kinase (PRKA) anchor protein 8-like

7.30

DNA binding

Cmtm5

CKLF-like MARVEL transmembrane domain containing 5

5.30

membrane

Cpne9

copine family member IX

7.24

Unknown

Amhr2

anti-Mullerian hormone receptor, type II

5.08

protein amino acid phosphorylation

Car12

Carbonic anyhydrase 12

7.21

one-carbon metabolic process

Sptbn4

spectrin, beta, non-erythrocytic 4

4.84

axonogenesis

Srpk3

SFRS protein kinase 3

7.11

protein amino acid phosphorylation

Gsta3

glutathione S-transferase A3

4.55

glutathione metabolic process

Casc1

cancer susceptibility candidate 1

6.90

Unknown

Grin2c

glutamate receptor, ionotropic, N-methyl D-aspartate 2 C

4.53

startle response

S1pr5

sphingosine-1-phosphate receptor 5

6.82

signal transduction

Fah

fumarylacetoacetate hydrolase

4.50

arginine catabolic process

Gpd1

glycerol-3-phosphate dehydrogenase 1 (soluble)

6.75

carbohydrate metabolic process

Ggn

gametogenetin

4.49

multicellular organismal development

Itsn2

intersectin 2

6.67

regulation of Rho protein signal transduction

Ntsr2

neurotensin receptor 2

4.13

signal transduction