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Table 1 Primers used in this study

From: Gene structure and expression of serotonin receptor HTR2Cin hypothalamic samples from infanticidal and control sows

Primers for HTR2C amplification

  
 

forward

reverse

template

size (bp)

Exon 1

TTTAGCCCAAGAGAGCGATG

TAGGGTCTGGGCTAGCAATG

genomic

637

Exon 2

TTCTGGCACTAATGAATATCAGC

CATGGTAAGTCAATAACGTCAAATG

genomic

315

Exon 3

CTGCATCCCCATTATGAGC

TGGACCTTTCCTTGCATCTC

genomic

300

Exon 4

AAATGAAAAATCTATCCTCTTTGC

GGCAGATTGAGGCAAATATAGC

genomic

413

Exon 5A

ACTCTGGGGACAGGAGGAAG

CTGCCATGATGACGAGAATG

genomic

400

Exon 5B

ATGGTGGACGCTTCAAATTC

TGCGCACATTCAATTACCTC

genomic

363

Exon 6

GCCCTAGAAAAGGCAAAATG

TAGCCGCTGCAATTCTACTG

genomic

463

Exon 7A

ACCCTTCCGTGTGCTGTAAC

CAAGCCTTCCCACAAAGAAC

genomic

519

Exon 7B

GAAAGCGTCGAAAGTCCTTG

TCAACATTTTTGCATCGAAC

genomic/cDNA

695

HTR2CX1-2

TTTAGCCCAAGAGAGCGATG

TTGAAGGATGGGGATTCTTG

cDNA

653

HTR2CX2-5

GTAGGCCAAGAATCCCCATC

ACCAATAGGCCAATCAGGTG

cDNA

263

HTR2CX4-5

CATGGTGAACCTGAGGAAAG

GCAGAGACAGTGGCATGA

cDNA

335

HTR2CX5-7

CATGCCACTGTCTCTGCTTG

TGTTGTTGACGAACACCTTG

cDNA

299/204

HTR2CNR

 

TTGCCCAAACAATAGCAATC

cDNA

 

HTR2CL

TTCTACAGCGTCCATCATGC

CACCTAAAGAAATTGCCCAAAC

qRT-PCR

143

HTR2CS

TGTCATGCCACTGTCTCTGC

ACACCGATCCAGCGAAATAG

qRT-PCR

145

  1. A list of primers used for PCR amplification of HTR2C exons from both genomic DNA, and cDNA prepared from a transcript pool. Primers were selected following comparison of human and porcine reference sequences to define the putative coding regions of the pig genome