BMC Neuroscience

Table 2 Qualitative listing of PWM predictions compiled from StAR and TSPO genes.

From: Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch

	StAR	TSPO	StAR	TSPO		StAR	TSPO	StAR	TSPO
Ar					NFYA
Arnt					NHLH1			□
Arnt-Ahr	■		□		Nkx2-5
Bapx1		■		□	NKX3-1		■		□
cEBP		■		□	Nobox			□
CREB1			□		NR1H2-RXR
Ddit3-Cebpa		■	□	□	NR2F1
E2F1					NR3C1		■		□
ELF5					Pax2
ELK1					Pax4
En1					Pax5			□
ESR1			□	□	Pax6			□
ETS1	■			□	Pbx
Evi1					Pdx1			□
Fos				□	PPARG				□
Foxa2					PPARG-RXRA
FOXC1					Prrx2			□
Foxd3					REL
FOXF2		■		□	RELA			□	□
FOXI1					REST			□	□
FOXL1					Roaz	■		□
Foxq1					RORA_1
GABPA			□		RORA_2
Gata1					RORA1
GATA2					RREB1	■		□
GATA3					RUNX1		■		□
Gfi					RUSH1-alfa
HAND1-TCF3		■		□	RXRA-VDR
HLF					RXR-VDR
HNF1A					Sox17		■	□
HNF4					Sox5				□
Hox11-CTF1					SOX9
IRF1		■	□	□	SP1	■		□
IRF2					SPI1
Klf4	■		□		SPIB		■		□
Lhx3		■	□	□	Spz1
MafB	■		□		SRF
MAX					SRY
MEF2A					Staf				□
MIZF					STAT1
Myb					T
MYC-MAX					TAL1-TCF3
Mycn					TBP
Myf			□		TCF1
MZF1_1-4	■		□		TEAD		■		□
MZF1_5-13	■		□		TFAP2A			□
NFIL3					TP53		■	□	□
NF-kappaB			□		USF1
NFKB1			□		YY1
NF-Y					ZEB1			□
					ZNF42_1-4	■		□

All 101 JASPAR PWMs that were mapped onto the zebra finch genome assembly are listed. Blocks in the row denote the presence of the PWM either in the 5'-focused region (filled in blocks) or across the entire gene territory (open blocks) for StAR and TSPO.

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ISSN: 1471-2202

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