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Table 1 Summary of steroid-related genes identified in the zebra finch genome assembly.

From: Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch

 

Ensembl model ID

Chromosomal location

Alternate location

StAR

ENSTGUG00000004778

chr22:2,790,291-2,803,402

 

TSPO

ENSTGUG00000012033

chr1A:64,600,558-64,604,825

 

CYP11A1

ENSTGUG00000016385

chrUn:111,323,270-111,327,067

 

HSD3B1

ENSTGUG00000013351

chr1:90,752,924-90,765,922

 

HSD3B7

ENSTGUG00000004368

chr19:4700526-4724260

 

CYP17

ENSTGUG00000010219

chr6:22,934,143-22,936,206

 

HSD17B1

ENSTGUG00000002682

chr27:2,575,793-2,577,330

 

HSD17B2

ENSTGUG00000004388

chr11:2,151,325-2,156,358

chrUn:30,861,771-30,869,026

HSD17B3

 

chrZ:9,425,091-9,449,191

 

HSD17B4

ENSTGUG00000001154

chrZ:24,424,040-24,517,666

 

HSD17B6

 

chrUn:44,543,014-44,547,896

 

HSD17B7

ENSTGUG00000017081

chr8_random:518,775-526,426

 

HSD17B10

ENSTGUG00000015458

chrUn:14,031,915-14,032,480

 

HSD17B11

ENSTGUG00000002260

chr4:8,273,553-8,281,927

 

HSD17B12

ENSTGUG00000010212

chr5:19,883,132-19,948,030

 

CYP19

ENSTGUG00000006993

chr10:9,056,446-9,074,753

 

   promoter 1a

 

chr10:9,078,023-9,078,512

 

   promoter 1b

 

chr10:9,052,768-9,083,661

chrUn:18,857,683-18,860,112

ERα

ENSTGUG00000011249

chr3:56,288,003-56,500,000

 

ERβ

ENSTGUG00000012942

chr5:54,900,184-54,948,467

 

PR

ENSTGUG00000012778

chr1:77374938-77451302

 

AR

ENSTGUG00000002760

chr4A: 6,416,086-6,447,982

 
  1. Genomic information for all twenty genes examined. Ensembl gene identifiers are listed for the eighteen genes with official models (HSD17B3 and HSD17B6 do not have Ensembl gene models). Chromosomal positions are also listed, as are the locations of either alternative mappings (HSD17B2) or annotated promoter regions (CYP19).
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BMC Neuroscience

ISSN: 1471-2202

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