Skip to main content

Table 1 Summary of steroid-related genes identified in the zebra finch genome assembly.

From: Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch

  Ensembl model ID Chromosomal location Alternate location
StAR ENSTGUG00000004778 chr22:2,790,291-2,803,402  
TSPO ENSTGUG00000012033 chr1A:64,600,558-64,604,825  
CYP11A1 ENSTGUG00000016385 chrUn:111,323,270-111,327,067  
HSD3B1 ENSTGUG00000013351 chr1:90,752,924-90,765,922  
HSD3B7 ENSTGUG00000004368 chr19:4700526-4724260  
CYP17 ENSTGUG00000010219 chr6:22,934,143-22,936,206  
HSD17B1 ENSTGUG00000002682 chr27:2,575,793-2,577,330  
HSD17B2 ENSTGUG00000004388 chr11:2,151,325-2,156,358 chrUn:30,861,771-30,869,026
HSD17B3   chrZ:9,425,091-9,449,191  
HSD17B4 ENSTGUG00000001154 chrZ:24,424,040-24,517,666  
HSD17B6   chrUn:44,543,014-44,547,896  
HSD17B7 ENSTGUG00000017081 chr8_random:518,775-526,426  
HSD17B10 ENSTGUG00000015458 chrUn:14,031,915-14,032,480  
HSD17B11 ENSTGUG00000002260 chr4:8,273,553-8,281,927  
HSD17B12 ENSTGUG00000010212 chr5:19,883,132-19,948,030  
CYP19 ENSTGUG00000006993 chr10:9,056,446-9,074,753  
   promoter 1a   chr10:9,078,023-9,078,512  
   promoter 1b   chr10:9,052,768-9,083,661 chrUn:18,857,683-18,860,112
ERα ENSTGUG00000011249 chr3:56,288,003-56,500,000  
ERβ ENSTGUG00000012942 chr5:54,900,184-54,948,467  
PR ENSTGUG00000012778 chr1:77374938-77451302  
AR ENSTGUG00000002760 chr4A: 6,416,086-6,447,982  
  1. Genomic information for all twenty genes examined. Ensembl gene identifiers are listed for the eighteen genes with official models (HSD17B3 and HSD17B6 do not have Ensembl gene models). Chromosomal positions are also listed, as are the locations of either alternative mappings (HSD17B2) or annotated promoter regions (CYP19).