Volume 15 Supplement 1

Abstracts from the Twenty Third Annual Computational Neuroscience Meeting: CNS*2014

Open Access

Using fMRI to characterize how cortex represents limb motions

  • Samir Menon1Email author,
  • Jack Zhu1,
  • Paul Quigley1,
  • Franco Pestilli2,
  • Kwabena Boahen3 and
  • Oussama Khatib1
BMC Neuroscience201415(Suppl 1):P126

DOI: 10.1186/1471-2202-15-S1-P126

Published: 21 July 2014

Neuroimaging experiments that map limb motions on to the brain observe fractured somatotopic maps, with correlated neural responses across functionally related joints in the arm [1]. Analyzing such experiments involves visually comparing winner-takes-all neural activation maps for different subjects that are generated with generalized linear models [2]. Such analyses, however, abstract cross-joint correlations and treat reliable deviations from canonical neural (haemodynamic) response functions as temporal noise. Here, using classification accuracy while delineating different limb motions as a metric, we demonstrate that the peak neural response amplitude---upon which winner-takes-all analyses are based---is the least informative part of the time-series. In contrast, our experiments suggest that neural responses are most informative after the initial response peak (t=4-10s). Our observations extend to primary motor (M1), pre-motor (PMd), somatosensory (S1), superior parietal (SupPar), and supplementary motor (SMA) cortices, matching prior region-agnostic results [3]. As expected for open-loop limb motions, median M1 and S1 classification accuracies are greater than SupPar, PMd and SMA. All accuracies exceed the ventricles, which set a data-driven noise threshold at chance (50-55% accuracy; chance=50%) and demonstrate that our datasets lack task-correlated noise.

Our results suggest that Functional Magnetic Resonance Imaging (fMRI) time-series responses convey sufficient information to classify a variety of motor tasks in regions where neural activity is expected to be correlated across conditions. Reproducing our results, however, may require fMRI datasets with minimal (<1mm) head-motion, no spatial smoothing, and tests for null (baseline) results in regions with no expected effect.


We used fMRI to scan three subjects who moved their wrist, elbow or shoulder up and down, or rotated their wrist or shoulder while holding two different weights (50g, 500g. 8s*32trials*10conditions). We used Freesurfer's Desikan--Killiany atlas to identify motor regions and iterated over each region in 1cm3 sections, using randomly sampled voxels (40 bootstraps; 50 of ~150 voxels) and a maximum-margin hyperplane with leave-one-out cross-validation to pair-wise classify limb motions. We also compared random (unbiased) responses with reliable voxels selected using a traditional general linear impulse response model.
Figure 1

Motor classification. A. Classification accuracy by region for a subject. B. Later stage fMRU neural responses improve classification accuracy. A sliding window of time-series data used increases accuracy till 15 seconds. C. Medican and 95%ile accuracies are shown for three subjects across a variety of regions.

Authors’ Affiliations

Department of Computer Science, Stanford University
Department of Psychology, Stanford University
Department of Bioengineering, Stanford University


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  3. Brantner G, Menon S, Schorpp G, Khatib O: SVM-based classification of motor-tasks on fmri-bold data. IEEE EMBS Neural Engineering. 2013Google Scholar


© Menon et al; licensee BioMed Central Ltd. 2014

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.