The MEK-ERK pathway negatively regulates bim expression through the 3' UTR in sympathetic neurons
© Hughes et al; licensee BioMed Central Ltd. 2011
Received: 14 December 2010
Accepted: 15 July 2011
Published: 15 July 2011
Apoptosis plays a critical role during neuronal development and disease. Developing sympathetic neurons depend on nerve growth factor (NGF) for survival during the late embryonic and early postnatal period and die by apoptosis in its absence. The proapoptotic BH3-only protein Bim increases in level after NGF withdrawal and is required for NGF withdrawal-induced death. The regulation of Bim expression in neurons is complex and this study describes a new mechanism by which an NGF-activated signalling pathway regulates bim gene expression in sympathetic neurons.
We report that U0126, an inhibitor of the prosurvival MEK-ERK pathway, increases bim mRNA levels in sympathetic neurons in the presence of NGF. We find that this effect is independent of PI3-K-Akt and JNK-c-Jun signalling and is not mediated by the promoter, first exon or first intron of the bim gene. By performing 3' RACE and microinjection experiments with a new bim-LUC+3'UTR reporter construct, we show that U0126 increases bim expression via the bim 3' UTR. We demonstrate that this effect does not involve a change in bim mRNA stability and by using PD184352, a specific MEK1/2-ERK1/2 inhibitor, we show that this mechanism involves the MEK1/2-ERK1/2 pathway. Finally, we demonstrate that inhibition of MEK/ERK signalling independently reduces cell survival in NGF-treated sympathetic neurons.
These results suggest that in sympathetic neurons, MEK-ERK signalling negatively regulates bim expression via the 3' UTR and that this regulation is likely to be at the level of transcription. This data provides further insight into the different mechanisms by which survival signalling pathways regulate bim expression in neurons.
In mammalian cells, two major apoptotic pathways have been described: the extrinsic (death receptor) pathway and the intrinsic (mitochondrial) pathway. The permeabilisation of the mitochondrial outer membrane is a key step in the intrinsic pathway, which proceeds following complex interactions between proapoptotic and antiapoptotic members of the Bcl-2 superfamily of cell death regulators. The BH3-only Bcl-2 family protein Bim is an important initiator and regulator of the intrinsic pathway since Bim can interact with both the antiapoptotic Bcl-2 proteins and the multidomain proapoptotic effector proteins Bax and Bak [1, 2].
Bim is a critical mediator of apoptosis in many cell types including NGF-dependent sympathetic neurons. In these cells bim RNA and Bim protein levels increase rapidly following NGF deprivation and peak at around 16 hours later [3, 4]. Overexpression of BimEL in sympathetic neurons is sufficient to induce the release of cytochrome c and apoptosis in the presence of NGF and sympathetic and sensory neurons isolated from bim-/- knockout mice are significantly protected from trophic factor withdrawal-induced death [3–5].
The binding of NGF to the TrkA tyrosine kinase receptor on the surface of sympathetic neurons activates the PI3-K-Akt and Raf-MEK-ERK signalling pathways which can both inhibit apoptosis and promote cell survival [6, 7]. It is now evident that a number of regulatory mechanisms exist to prevent the inappropriate expression of bim in neurons. Three transcriptional pathways have been described, each of which targets elements within the bim promoter. Firstly, bim transcription is repressed by PI3-K-Akt signalling: active Akt phosphorylates FOXO3a, which is sequestered in the cytoplasm by 14-3-3 protein and following NGF withdrawal FOXO3a translocates into the nucleus of sympathetic neurons and activates bim expression via two conserved FOXO binding sites [8, 9]. Secondly, bim is activated by a Cdk4-E2F-Myb pathway following NGF withdrawal in neuronally differentiated PC12 cells and this requires Myb binding sites in the bim promoter . Thirdly, MLK-JNK-c-Jun signalling appears to be critical for bim upregulation in sympathetic neurons: the overexpression of a dominant negative c-Jun protein reduces the increase in bim mRNA and protein level that occurs after NGF withdrawal  and the jun AA knock-in mutation, which eliminates the two major JNK phosphorylation sites in c-Jun, reduces the increase in Bim protein level after NGF withdrawal .
Post-translational mechanisms that regulate the activity of the Bim protein in neuronal cells have also been described. BimEL is a target of the RAF-MEK-ERK signalling pathway, which delivers important survival signals in many different cell types. In neuronally differentiated PC12 cells maintained in the presence of NGF, BimEL is phosphorylated by ERK , and studies with serum-treated fibroblasts have demonstrated that BimEL contains an ERK1/2 docking site and ERK phosphorylation sites via which the MEK1/2-ERK1/2 pathway promotes the phosphorylation of BimEL leading to its ubiquitylation and degradation via the proteasome [13–17]. Furthermore, the ERK1/2-dependent phosphorylation of BimEL leads to the dissociation of BimEL from complexes with the antiapoptotic Mcl-1 and Bcl-xL proteins and also the proapoptotic Bax protein [17, 18].
However, it is not known whether the MEK-ERK pathway controls bim expression in neurons at a step prior to the phosphorylation of BimEL. Here, we have investigated this using NGF-dependent developing sympathetic neurons. We show that in the presence of NGF, MEK-ERK signalling reduces bim mRNA levels and that this is a transcriptional mechanism mediated through the bim 3' UTR.
The MEK-ERK pathway negatively regulates bim mRNA expression independently of the PI3-K-Akt and the JNK-c-Jun pathways in sympathetic neurons
Next, we verified that Bim protein levels are upregulated in sympathetic neurons following treatment with U0126 or with the PI3-K inhibitor LY294002 (Figure 1B). Immunoblots were performed using extracts from sympathetic neurons either maintained in NGF-containing medium, withdrawn from NGF for 16 hours or treated with either LY294002 (50 μM) or U0126 (10 μM) in the presence of NGF for 16 hours. Bim protein levels increased strongly following NGF withdrawal and following treatment with U0126 or with LY294002, whereas α-Tubulin protein levels were not altered (Figure 1B).
We then confirmed that U0126 inhibits MEK-ERK signalling without affecting the two major signalling pathways known to be involved in Bim regulation, the PI3-K-Akt pathway and the JNK-c-Jun pathway (Figure 1C, D). Immunoblots were performed with extracts from sympathetic neurons either maintained in the presence of NGF, withdrawn from NGF for 16 hours or treated with U0126 (10 μM) for 16 hours in the presence of NGF. As expected, we found that the level of phosphorylation of Akt at Ser 473 is high when neurons are maintained in the presence of NGF and falls following NGF withdrawal  (Figure 1C) and that c-Jun phosphorylation at serine 63 increases following NGF withdrawal  (Figure 1D). Importantly, treatment with U0126 did not affect phospho-Akt or phospho-c-Jun levels (Figure 1C, D), thereby confirming that the PI3-K-Akt and the JNK-c-Jun pathways are independent of MEK-ERK signalling in sympathetic neurons.
To investigate whether the MEK-ERK pathway regulates bim mRNA levels, we carried out q-PCR with cDNA prepared from sympathetic neurons maintained in NGF-containing medium, withdrawn from NGF for 16 hours, or treated with either LY294002 (50 μM) or U0126 (10 μM) in the presence of NGF for 16 hours (Figure 1E). The level of bim mRNA was analysed relative to the level of the transcripts for the house-keeping genes Hprt1 and Gapdh. Bim mRNA levels relative to Hprt1 are shown (Figure 1E), since both house-keeping genes behaved in a similar way. After NGF withdrawal, the level of bim mRNA increased by 5 fold and upon treatment with LY294002 it increased by 4.2 fold, as described previously . Interestingly, when the cells were treated with U0126, there was also a significant (3.4 fold) increase in the level of bim mRNA. This data indicates that in the presence of NGF the MEK-ERK pathway negatively regulates bim mRNA expression in sympathetic neurons.
The MEK-ERK pathway negatively regulates bim mRNA expression in sympathetic neurons via regulatory elements outside of the bim promoter, exon 1 and first intron
The bim 3' UTR contains elements that are responsive to NGF withdrawal
The bim 3'UTR is a target of the MEK-ERK pathway in sympathetic neurons
To ascertain whether the bim 3' UTR is a target of the MEK-ERK pathway, sympathetic neurons were microinjected with bim-LUC+3'UTR or bim-LUC and the cells were either maintained in medium containing NGF or treated with U0126 (10 μM) in the presence of NGF. After 16 hours, relative luciferase activity was determined (Figure 3D, E). As demonstrated previously, inhibition of the MEK-ERK pathway with U0126 did not activate the bim-LUC construct (Figure 3D, E). However, when bim-LUC+3'UTR was treated with U0126 there was a significant activation of the reporter to 2.5 fold (Figure 3D, E). This suggests that the regulation of bim mRNA level via the MEK-ERK-pathway is mediated by the 3' UTR region of the bim gene.
Inhibition of the MEK-ERK pathway does not alter bim mRNA stability
As a further control, we included a time course q-PCR experiment in which we compared cells treated with U0126 and actinomycin-D to those treated with U0126 only (Figure 4D). We found that bim mRNA levels increased over the 16 hour time course and were significantly higher, 3.3 fold, at 16 hours following treatment with U0126 compared to time point 0, and that treatment with actinomycin-D abolished this up-regulation (Figure 4D). Furthermore, this data corroborates our initial finding that treatment with U0126 for 16 hours significantly elevates the level of bim mRNA in sympathetic neurons (Figure 1E,4D).
The MEK1/2-ERK1/2 pathway negatively regulates bim mRNA expression in sympathetic neurons
We then performed q-PCR, as for Figure 1E, including cDNA prepared from sympathetic neurons treated with PD184352 at 2 μM in the presence of NGF for 16 hours (Figure 5C). The level of bim mRNA was analysed relative to the level of the transcripts for the house-keeping genes Hprt1 and Gapdh (Bim mRNA levels relative to Hprt1 are shown). When sympathetic neurons were treated with PD184352 there was a significant (2.9 fold) increase in the level of bim mRNA (Figure 5C). This was a similar fold induction to that observed following treatment with U0126 (Figure 1E, 5C).
Next, we microinjected sympathetic neurons with bim-LUC+3'UTR or bim-LUC and the cells were either maintained in medium containing NGF or treated with PD184352 (2 μM) in the presence of NGF. After 16 hours, relative luciferase activity was determined (Figure 5D, E). Inhibition of the MEK1/2-ERK1/2 pathway with PD184352 did not activate the bim-LUC construct, but significantly activated the bim-LUC+3'UTR construct by 2.1 fold (Figure 5D, E). Taken together, this data confirms that the MEK1/2-ERK1/2 pathway represses bim mRNA levels through the bim 3'UTR.
The MEK-ERK pathway contributes to cell survival in sympathetic neurons
After initially observing that the MEK-ERK pathway negatively regulates bim mRNA expression in sympathetic neurons, we generated a bim-LUC+3'UTR reporter construct to investigate a potential role for the 3' UTR in this mechanism. By microinjecting the bim-LUC+3'UTR construct into sympathetic neurons, we localised the region responsive to MEK-ERK signalling to the bim 3' UTR. In addition, we found that the bim-LUC+3'UTR construct is a useful tool for studying bim regulation since it has a lower basal expression in the presence of NGF and an increased induction following NGF withdrawal. It may therefore be more representative of the endogenous bim gene, in comparison with our previous bim-LUC reporter [8, 9].
To further investigate this mechanism, we studied bim mRNA stability following treatment with or without U0126. Since we found no significant effect upon the half life of the bim mRNA following treatment with U0126, we concluded that MEK/ERK signalling does not affect bim mRNA stability, and therefore may regulate bim mRNA levels by a transcriptional mechanism. Future studies will uncover potential cis-acting elements located in the bim 3' UTR, such as enhancers or silencers that may bind DNA-binding proteins that regulate transcription from the upstream bim promoter . In principle, these regulators might be activators that are repressed by MEK-ERK signalling, or alternatively they could be repressors that are activated by the MEK-ERK pathway.
Recently, other groups have reported a role for the bim 3' UTR in modulating bim mRNA levels. Studies with Baf-3 cells have revealed that bim mRNA is stabilised when IL3 is limiting and this regulation occurs via AU-rich elements found within the bim 3' UTR . Bim is also a target for regulation by miRNAs: the bim 3' UTR contains sequences targeted by miR-17~92 microRNAs and the conditional knockout of miR-17~92 results in elevated Bim levels and an inhibition of B cell development . The bim mRNA can also be targeted by miR-221 and miR-222, both of which are induced by NGF-stimulation in PC12 cells and this is linked to the MEK1/2-ERK1/2 pathway . However, all of these studies are associated with mRNA stability and not transcription, so is unlikely that any of them account for the mechanism we have described here.
In sympathetic neurons both the MEK1/2-ERK1/2 and the MEK5-ERK5 signalling pathways are stimulated in response to NGF and are activated downstream of Ras , and U0126 inhibits both MEK1/2 and MEK5 . A number of reports have described the importance of MEK1/2-ERK1/2 signalling in the post-translational control of the Bim protein in different cell types [13–18]. The downstream events involved in MEK5-ERK5 signalling in neurons are less well defined, but it has been shown that ERK5 can play an important role in neurotrophin-mediated survival, and deletion of the erk5 gene results in a significant increase in apoptosis in developing sympathetic neurons . To determine which of the ERK signalling pathways targets the 3' UTR of the bim gene, we used the specific MEK1/2-ERK1/2 inhibitor PD184352 . We found that this compound had similar effects to U0126, indicating that this mechanism of bim regulation largely depends on the MEK1/2-ERK1/2 pathway in sympathetic neurons.
Finally, we showed that inhibition of the prosurvival MEK-ERK pathway by treatment with U0126 was sufficient to induce some neuronal death in the presence of NGF. However, it should be noted that the effect was modest compared to that observed following NGF deprivation. This is probably because the PI3-K-Akt survival pathway is still active in cells treated with U0126 (Figure 1).
It is now evident that a number of complex regulatory mechanisms are in place to constrain the expression and the activity of the proapoptotic Bim protein. Thus, using the well-characterised model of NGF-dependent developing sympathetic neurons, we have identified an additional mechanism by which bim mRNA levels are regulated. We have shown that MEK-ERK signalling represses bim mRNA levels through the bim 3' UTR (Figure 7). Since other reports investigating the function of the bim 3' UTR in modulating bim mRNA expression have focused on the role of mRNA stability, it is likely that the mechanism we have identified here has not yet been studied in other cell types.
The bim-LUC reporter construct consists of a 5.2 kb fragment, containing the region immediately 5' to the rat bim initiator codon, sub-cloned into pGL3-Basic . The bim-LUC+3'UTR reporter construct was generated by PCR amplification of the rat bim 3' UTR from a restriction fragment cloned from the PAC clone 215h9 (rat P1 artificial chromosome (PAC) library RPC131, UK Human Genome Mapping Project Resource Centre, Cambridge, UK). Initially, 3' RACE was used to define the end point of the rat bim 3' UTR for subsequent cloning: RACE was performed on rat lung poly A+ RNA using the Marathon cDNA Amplification Kit (Clontech). The following primers were then used to generate the 3'UTR in 2 fragments: Fragment 1, 5'-CTCACTAGTCAGGAGCTTCGTGCAG-3' and 5'-CTCCTACAAGGCACAAAACCCG-3'; fragment 2, 5'-CTATACGGATGTCCCTGTACTGTATC-3' and 5'-CTCACTAGTCATGAGAGCTAGTCGCAA-3'. The 3' UTR was assembled in pBluescript SK (Stratagene) using a unique BglII restriction site within the 4.2-kb region to link fragments 1 and 2. The 3' UTR was sub-cloned into bim-LUC, using an XbaI restriction site downstream of the luciferase reporter gene and upstream of the SV40 late poly (A) signal.
Sympathetic neurons were isolated from the superior cervical ganglia (SCG) of 1-day-old Sprague Dawley rats and cultured as described previously . Animal experiments were performed according to the Animals (Scientific Procedures) Act 1986 under a license reviewed and approved by the Biological Services Unit at University College London. Cells were maintained in SCG medium supplemented with 2.5S NGF (Cedarlane) at 50 ng/ml, and fluorodeoxyuridine and uridine (both from Sigma-Aldrich) each at 20 μM. In NGF withdrawal experiments, cells were rinsed twice with medium (without NGF) and then re-fed with medium containing an anti-NGF antibody at 100 ng/ml (Chemicon). The PI3-K inhibitor LY294002 was used at a concentration of 50 μM and the MEK inhibitor U0126 at a concentration of 10 μM (both from Promega). The MEK1/2 inhibitor PD184352 was used at a concentration of 2 μM and was kindly provided by Simon Cook (The Babraham Institute). The RNA synthesis inhibitor actinomycin-D was used at a concentration of 0.1 μg/ml. When actinomycin-D was used in conjunction with U0126, cells were either pre-treated with U0126 (or actinomycin-D) for 16 hours prior to the addition of actinomycin-D (or U0126) and then actinomycin-D and U0126 were added at the same time (time point 0). LY294002, U0126 and PD184352 were dissolved in DMSO and therefore equal volumes of DMSO were added to the untreated cells as a control.
Sympathetic neurons were cultured in vitro for 5-7 days and then microinjected as described previously . Dual luciferase assays were carried out on injected cells using the Dual Luciferase reporter assay system (Promega). Cells were harvested for luciferase assays at 16 hours following NGF withdrawal.
Real-time quantitative PCR (q-PCR)
RNA was isolated from sympathetic neurons and reverse transcribed as described above. A bim specific primer and probe set was designed using the PrimerExpress software v2.0 (Applied Biosystems): bim forward primer 5'-CCAGGCCTTCAACCATTATCTC-3', bim reverse primer 5'-GCGCAGATCTTCAGGTTCCT-3' and bim probe 5'-TGCAATGGCTTCCATAAGGCCAGTCTCA-3'. Glyceraldehyde-3-phosphate dehydrogenase (Gapdh) and Hypoxanthine phosphoribosyltransferase 1 (Hprt1) were used as house-keeping (control) genes (both from Applied Biosystems). Q-PCR data was analysed using the 2-ΔΔCT relative quantitation method .
Immunoblotting was carried out with whole cell extracts from sympathetic neurons as described previously . Proteins were separated on 7% or 12% SDS polyacrylamide gels. The following rabbit polyclonal primary antibodies from Cell Signaling were used: ERK1/2 antibody (#9102), phospho-ERK1/2 (Thr 202/Tyr 204) (#9101), ERK5 (#3372S), Akt antibody (#9272) and phospho-Akt antibody (Ser 473) (#9271). The phospho-ERK5 (Thr 218/Tyr 220) goat polyclonal antibody was from Santa Cruz (sc-16564), as was the mouse monoclonal phospho-c-Jun (Ser 63) antibody (sc-822). The mouse monoclonal c-Jun antibody was from BD Biosciences (#610327), the rabbit polyclonal Bim antibody was from Chemicon (AB17003) and the rat monoclonal α-Tubulin antibody was from AbD Serotec. For each immunoblotting experiment, several repeats were carried out and representative blots are shown.
Sympathetic neurons were fixed in 4% paraformaldehyde, permeabilised in 0.5% Triton-X-100, and stained with Hoechst dye to visualise nuclear morphology. Slides were viewed using a Zeiss Axioplan 2 fluorescence microscope using a Plan-Apochromat ×10 objective or ×63 oil objective. Cells were scored in a blinded manner wherever possible.
In each set of experiments data is normalised to a control sample (for example, bim-LUC +NGF is set to 1). For microinjection, the relative induction of a DNA construct is calculated by dividing the relative luciferase activity in the absence of NGF by the relative luciferase activity in the presence of NGF. All data are presented as the mean ± S.E. of multiple experiments.
The statistical significance of differences between means was evaluated by performing an unpaired Student's T-test (for two-tailed distributions). To compare normalised data to the control sample, that has no error associated to it (for example, when comparing data to bim-LUC +NGF, which is set to 1), the log10 values of the data were taken and a one sample T-test was used (for two-tailed distributions). Statistical significance is presented as p-values: *** p < 0.001, ** p < 0.01, * and p < 0.05.
We thank Francesca Menghi for critical reading of the manuscript and we thank Simon Cook for providing the PD184352 compound. This work was supported by The Wellcome Trust (Senior Research Fellowship in Basic Biomedical Science 057700 to JH).
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