Volume 11 Supplement 1
Functional localization of ion channel densities from calcium fluorescence
© Raol and Cox; licensee BioMed Central Ltd. 2010
Published: 20 July 2010
Single cells learn by tuning their synaptic conductances and redistributing their excitable machinery. To reveal its learning rules, one must therefore know how the cell remaps its ion channels in response to physiological stimuli. We exploit the recent ability to dynamically monitor cytosolic dye-buffered calcium, throughout rat hippocampal pyramidal cells in slice, with sub-millisecond temporal resolution and sub-micron spatial resolution  in the construction of a functional map of calcium and potassium channel densities.
Focal uncaging of cytosolic calcium in the presence of dye to determine dye kinetics and intracellular calcium extrusion rates,
Suprathreshold current injection at the soma to infer calcium current from calcium fluorescence using (1),
Recovery of the calcium channel density and voltage information from the calcium current in (2),
Recovery of various potassium channel densities through voltage information in (3) and the selective use of potassium channel blockers.
We demonstrate the validity of this algorithm on synthetic data generated from channel densities and morphologies consistent with previous experimental results . Finally, we explore the robustness of this algorithm to experimental error and noise.
Biomedical Discovery Training Program of the W. M. Keck Center for Interdisciplinary Bioscience Training of the Gulf Coast Consortia (NIH Grant No. 1 T90 DA022885 and 1 R90 DA023418) and VIGRE award to the departments of Computational and Applied Mathematics, Math and Statistics (NSF DMS-0240058)
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This article is published under license to BioMed Central Ltd.